TargIDe

TargIDe: a machine-learning workflow for Target IDentification of molecules with anti-biofilm activity against Pseudomonas aeruginosa

How to use TargIDe:

1. Download the database file of P. aeruginosa molecules with anti-biofilm activity from https://github.com/BioSIM-Research-Group/TargIDe/blob/main/TargIDe/Database/TargIDe_Database_Descriptors_Padel_06122022.xlsx .
2. Download the automatic workflow implementation file (Orange software *.ows file) from https://github.com/BioSIM-Research-Group/TargIDe/blob/main/TargIDe/OrangeWorkflow/TargIDe_Workflow_06122022.ows .
3. Load the workflow file in Orange.
4. Import the database file using the “import csv file” widget.
5. The calculations will run automatically.
6. Results can be visualized using the ROC analysis and Confusion Matrix.

The Orange data mining software can be obtained at: https://orangedatamining.com/.