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Merge pull request #59 from fhdsl/website
Revise docker to pull from intro to R
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,76 +1,7 @@ | ||
| FROM rocker/tidyverse:latest | ||
| FROM jhudsl/intro_to_r:1.1.1 | ||
| LABEL maintainer="[email protected]" | ||
| WORKDIR /rocker-build/ | ||
|
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||
| # Install apt-getable packages to start | ||
| RUN apt-get update && apt-get install -y --no-install-recommends apt-utils dialog | ||
| RUN apt-get install -y --no-install-recommends \ | ||
| libxt6 \ | ||
| libpoppler-cpp-dev \ | ||
| vim \ | ||
| libglpk40 \ | ||
| curl \ | ||
| gpg | ||
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||
| # Install gh | ||
| RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg; | ||
| RUN echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null; | ||
| RUN apt update && apt install -y gh; | ||
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| # Uninstall old version of pandoc | ||
| # RUN sudo apt-get purge pandoc pandoc-citeproc pandoc-data \ | ||
| # && sudo apt-get autoremove --purge | ||
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| # Install pandoc | ||
| RUN wget https://github.com/jgm/pandoc/releases/download/3.2.1/pandoc-3.2.1-1-amd64.deb \ | ||
| && sudo apt-get install ./pandoc-3.2.1-1-amd64.deb | ||
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||
| # Create new symlinks | ||
| RUN ln -s /usr/bin/pandoc /usr/lib/rstudio-server/bin/pandoc | ||
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| # Add curl, bzip2, libbz2-dev, liblzma-dev | ||
| RUN apt-get update -qq && apt-get -y --no-install-recommends install \ | ||
| bzip2 \ | ||
| curl \ | ||
| libbz2-dev \ | ||
| liblzma-dev | ||
|
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||
| # Install pip3 and installation tools | ||
| RUN apt-get -y --no-install-recommends install \ | ||
| python3-pip python3-dev | ||
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||
| # DaSEH package | ||
| RUN Rscript -e "options(warn = 2); install.packages('remotes'); remotes::install_github('fhdsl/dasehr'); remotes::install_github('MatthewBJane/ThemePark')" | ||
|
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||
| # R packages | ||
| RUN Rscript -e "options(warn = 2);install.packages( \ | ||
| c('bookdown', \ | ||
| 'here', \ | ||
| 'kableExtra', \ | ||
| 'naniar', \ | ||
| 'pander'), \ | ||
| repos = 'https://cloud.r-project.org/')" | ||
|
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||
| # Other packages | ||
| RUN Rscript -e "devtools::install_github('hadley/emo')" | ||
| RUN Rscript -e "install.packages('esquisse')" | ||
| RUN Rscript -e "install.packages('directlabels')" | ||
| RUN Rscript -e "install.packages('plotly')" | ||
| RUN Rscript -e "install.packages('tidylog')" | ||
| RUN Rscript -e "install.packages('patchwork')" | ||
| RUN Rscript -e "install.packages('corrplot')" | ||
| RUN Rscript -e "install.packages('broom')" | ||
| RUN Rscript -e "install.packages('config')" | ||
| RUN Rscript -e "install.packages('optparse')" | ||
| RUN Rscript -e "install.packages('faraway')" | ||
| RUN Rscript -e "install.packages('epitools')" | ||
|
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||
| # Install pdflatex | ||
| RUN apt-get install -y texlive-latex-base texlive-latex-extra | ||
| RUN apt-get install -y texlive-fonts-recommended texlive-latex-recommended | ||
| RUN Rscript -e "options(warn = 2); remotes::install_github('fhdsl/dasehr')" | ||
|
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||
| # Copy over git token | ||
| COPY git_token.txt . | ||
|
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||
| # Set final workdir for commands | ||
| WORKDIR /home/rstudio |