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Merge cf69744aab9c15f688b5494eb7772af4ddfa702b into 3bf4c83c32b36e278… #4

Merge cf69744aab9c15f688b5494eb7772af4ddfa702b into 3bf4c83c32b36e278…

Merge cf69744aab9c15f688b5494eb7772af4ddfa702b into 3bf4c83c32b36e278… #4

# This workflow re-renders everything regardless of whether it's changed or not
name: Render everything manually
on:
workflow_dispatch:
jobs:
yaml-check:
name: Load user automation choices
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GH_PAT }}
# Use the yaml-env-action action.
- name: Load environment from YAML
uses: doughepi/[email protected]
with:
files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence.
outputs:
toggle_bookdown: "${{ env.RENDER_BOOKDOWN }}"
toggle_coursera: "${{ env.RENDER_COURSERA }}"
toggle_leanpub: "${{ env.RENDER_LEANPUB }}"
make_book_txt: "${{ env.MAKE_BOOK_TXT }}"
rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}"
toggle_quiz_check: "${{ env.CHECK_QUIZZES }}"
toggle_make_labs: "${{ env.MAKE_LABS }}"
########################## Site ##############################
render-main:
name: Render Main Site and Materials
needs: yaml-check
runs-on: ubuntu-latest
container:
image: ${{needs.yaml-check.outputs.rendering_docker_image}}
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Give permission to access the repo
- name: safelist repository
run: |
repo_name='${{ github.event.repository.name }}'
git config --global --add safe.directory /__w/$repo_name/$repo_name
# # Checks-out your repository with the token so your job can access it
- name: checkout
uses: actions/checkout@v4
with:
# get the full repo
fetch-depth: 0
# use github PAT
token: ${{ secrets.GH_PAT }}
- name: Get all files
id: all-files
uses: tj-actions/changed-files@v41
run: |
echo "files=$(ls -R | grep -E '\.Rmd$')" >> $GITHUB_OUTPUT
# We want a fresh run of the renders each time - so first delete old html files
- name: Delete old *.html
run: Rscript -e "rmarkdown::clean_site(preview = FALSE)"
# Now we want to render all the html files from the Rmd files
- name: Run render html for the main site
id: site
run: Rscript -e "rmarkdown::render_site()"
# Render module details for syllabus
- name: Render module details for syllabus
run: Rscript "scripts/render_module_details_for_syllabus.R"
# Create blank labs - runs quickly, so just does it for all of them
- name: Run lab converter
if: ${{needs.yaml-check.outputs.toggle_make_labs == 'yes'}}
shell: bash
run: bash scripts/blank_labs_from_keys.sh
# Render all module files
- name: Render html of modules
run: |
Rscript --vanilla "scripts/render_modules.R" --files "${{ steps.all-files.outputs.files }}"
# Render the cheatsheets
- name: Render Cheatsheet pdfs
run: |
Rscript --vanilla "scripts/render_cheatsheets.R" --files "${{ steps.all-files.outputs.files }}"
# Render resource pdfs
- name: Render Resource pdfs
run: |
Rscript --vanilla "scripts/render_resources.R" --files "${{ steps.all-files.outputs.files }}"
# Generate list of files that need pdfs
- name: Generate list of lectures that need pdfs generated
run: |
Rscript --vanilla "scripts/render_html_list.R"
echo the following need pdfs:
echo "$(cat files.txt)"
- name: Store list of lectures that need pdfs generated // Delete intermediate files
id: getfiles
run: |
echo "files=$(cat files.txt)" >> $GITHUB_OUTPUT
rm files.txt
rm cheatsheet_files.csv
rm lab_files.csv
rm lecture_files.csv
# This checks on the steps before it and makes sure that they completed.
# If the renders didn't complete we don't want to commit the file changes
- name: Check on render steps
if: steps.site.outcome != 'success'
run: |
echo site status ${{steps.site.outcome}}
exit 1
# Commit the rendered site files - html files and site_libs files
- name: Commit rendered site files
run: |
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
git add . --force
git commit -m 'Render site' || echo "No changes to commit"
git pull --rebase --set-upstream origin main --allow-unrelated-histories --strategy-option=ours
git push origin main || echo "No changes to push"
# Save files for conversion to pdf
outputs:
pdffiles: "${{ steps.getfiles.outputs.files }}"
########################## PDFs ##############################
render-pdf-lectures:
name: Render pdf lecture slides
needs: render-main
runs-on: ubuntu-latest
container:
image: ${{needs.yaml-check.outputs.rendering_docker_image}}
strategy:
matrix:
modulenames: ${{fromJson(needs.render-main.outputs.pdffiles)}}
steps:
# Give permission to access the repo
- name: safelist repository
run: |
repo_name='${{ github.event.repository.name }}'
git config --global --add safe.directory /__w/$repo_name/$repo_name
- name: Checkout files
uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GH_PAT }}
# Set up git checkout
- name: Set up git checkout
run: |
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
git fetch --all
git checkout main
git merge -s recursive --strategy-option=theirs origin/main --allow-unrelated-histories
shell: bash
# Render pdfs of slides
- name: Convert HTML to PDF
uses: fifsky/html-to-pdf-action@master
with:
htmlFile: ./modules/${{ matrix.modulenames }}/${{ matrix.modulenames }}.html
outputFile: ./modules/${{ matrix.modulenames }}/${{ matrix.modulenames }}.pdf
# Commit the rendered site files - html files and site_libs files
- name: Commit pdfs
run: |
git status
git add *.pdf --force
git commit -m 'Render pdfs' || echo "No changes to commit"
git status
git pull --rebase --set-upstream origin main --allow-unrelated-histories --strategy-option=ours
git push --force || echo "No changes to commit"