changing out the slides for more daseh specific updates #113
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| # It was adapted by Candace Savonen for the OTTR_template https://github.com/jhudsl/OTTR_Template. | |
| # This code was adapted by Carrie Wright to enable automated rendering of the site associated with this repository | |
| name: Render html | |
| # Controls when the action will run. Triggers the workflow on push | |
| # events only for the master branch | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main, staging ] | |
| paths: | |
| - '**.Rmd' | |
| - '**.md' | |
| jobs: | |
| yaml-check: | |
| name: Load user automation choices | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.GH_PAT }} | |
| # Use the yaml-env-action action. | |
| - name: Load environment from YAML | |
| uses: doughepi/[email protected] | |
| with: | |
| files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence. | |
| outputs: | |
| toggle_bookdown: "${{ env.RENDER_BOOKDOWN }}" | |
| toggle_coursera: "${{ env.RENDER_COURSERA }}" | |
| toggle_leanpub: "${{ env.RENDER_LEANPUB }}" | |
| make_book_txt: "${{ env.MAKE_BOOK_TXT }}" | |
| rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}" | |
| toggle_quiz_check: "${{ env.CHECK_QUIZZES }}" | |
| toggle_make_labs: "${{ env.MAKE_LABS }}" | |
| ########################## Site ############################## | |
| render-main: | |
| name: Render Main Site and Materials | |
| needs: yaml-check | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{needs.yaml-check.outputs.rendering_docker_image}} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Give permission to access the repo | |
| - name: safelist repository | |
| run: | | |
| repo_name='${{ github.event.repository.name }}' | |
| git config --global --add safe.directory /__w/$repo_name/$repo_name | |
| # # Checks-out your repository with the token so your job can access it | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| # get the full repo | |
| fetch-depth: 0 | |
| # use github PAT | |
| token: ${{ secrets.GH_PAT }} | |
| - name: Get changed files | |
| id: changed-files | |
| uses: tj-actions/changed-files@v41 | |
| # NOTE: `since_last_remote_commit: true` is implied by default and falls back to the previous local commit. | |
| - name: List all changed files | |
| run: | | |
| for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
| echo "$file was changed" | |
| done | |
| # We want a fresh run of the renders each time - so first delete old html files | |
| - name: Delete old *.html | |
| run: Rscript -e "rmarkdown::clean_site(preview = FALSE)" | |
| # Now we want to render all the html files from the Rmd files | |
| - name: Run render html for the main site | |
| id: site | |
| run: Rscript -e "rmarkdown::render_site()" | |
| # Render module details for syllabus | |
| - name: Render module details for syllabus | |
| run: Rscript "scripts/render_module_details_for_syllabus.R" | |
| # Create blank labs - runs quickly, so just does it for all of them | |
| - name: Run lab converter | |
| if: ${{needs.yaml-check.outputs.toggle_make_labs == 'yes'}} | |
| shell: bash | |
| run: bash scripts/blank_labs_from_keys.sh | |
| # Render all module files | |
| - name: Render html of modules | |
| run: | | |
| Rscript --vanilla "scripts/render_modules.R" --files "${{ steps.changed-files.outputs.all_changed_files }}" | |
| # Render the cheatsheets | |
| - name: Render Cheatsheet pdfs | |
| run: | | |
| Rscript --vanilla "scripts/render_cheatsheets.R" --files "${{ steps.changed-files.outputs.all_changed_files }}" | |
| # Render resource pdfs | |
| - name: Render Resource pdfs | |
| run: | | |
| Rscript --vanilla "scripts/render_resources.R" --files "${{ steps.changed-files.outputs.all_changed_files }}" | |
| # Generate list of files that need pdfs | |
| - name: Generate list of lectures that need pdfs generated | |
| run: | | |
| Rscript --vanilla "scripts/render_html_list.R" | |
| echo the following need pdfs: | |
| echo "$(cat files.txt)" | |
| - name: Store list of lectures that need pdfs generated // Delete intermediate files | |
| id: getfiles | |
| run: | | |
| echo "files=$(cat files.txt)" >> $GITHUB_OUTPUT | |
| rm files.txt | |
| rm cheatsheet_files.csv | |
| rm lab_files.csv | |
| rm lecture_files.csv | |
| # This checks on the steps before it and makes sure that they completed. | |
| # If the renders didn't complete we don't want to commit the file changes | |
| - name: Check on render steps | |
| if: steps.site.outcome != 'success' | |
| run: | | |
| echo site status ${{steps.site.outcome}} | |
| exit 1 | |
| # Commit the rendered site files - html files and site_libs files | |
| - name: Commit rendered site files | |
| run: | | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| git add . --force | |
| git commit -m 'Render site' || echo "No changes to commit" | |
| git pull --rebase --set-upstream origin main --allow-unrelated-histories --strategy-option=ours | |
| git push origin main || echo "No changes to push" | |
| # Save files for conversion to pdf | |
| outputs: | |
| pdffiles: "${{ steps.getfiles.outputs.files }}" | |
| ########################## PDFs ############################## | |
| render-pdf-lectures: | |
| name: Render pdf lecture slides | |
| needs: render-main | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ${{needs.yaml-check.outputs.rendering_docker_image}} | |
| strategy: | |
| matrix: | |
| modulenames: ${{fromJson(needs.render-main.outputs.pdffiles)}} | |
| steps: | |
| # Give permission to access the repo | |
| - name: safelist repository | |
| run: | | |
| repo_name='${{ github.event.repository.name }}' | |
| git config --global --add safe.directory /__w/$repo_name/$repo_name | |
| - name: Checkout files | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| token: ${{ secrets.GH_PAT }} | |
| # Set up git checkout | |
| - name: Set up git checkout | |
| run: | | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| git fetch --all | |
| git checkout main | |
| git merge -s recursive --strategy-option=theirs origin/main --allow-unrelated-histories | |
| shell: bash | |
| # Render pdfs of slides | |
| - name: Convert HTML to PDF | |
| uses: fifsky/html-to-pdf-action@master | |
| with: | |
| htmlFile: ./modules/${{ matrix.modulenames }}/${{ matrix.modulenames }}.html | |
| outputFile: ./modules/${{ matrix.modulenames }}/${{ matrix.modulenames }}.pdf | |
| # Commit the rendered site files - html files and site_libs files | |
| - name: Commit pdfs | |
| run: | | |
| git status | |
| git add *.pdf --force | |
| git commit -m 'Render pdfs' || echo "No changes to commit" | |
| git status | |
| git pull --rebase --set-upstream origin main --allow-unrelated-histories --strategy-option=ours | |
| git push --force || echo "No changes to commit" |