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update gatb-core
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Rayan CHIKHI committed Feb 8, 2022
1 parent 0a5bb2a commit 40469f3
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion gatb-core
Submodule gatb-core updated 39 files
+1 −1 .travis.yml
+8 −8 README.md
+6 −4 gatb-core/cmake/DefineInteger.cmake
+0 −6 gatb-core/cmake/Delivery.cmake
+6 −5 gatb-core/doc/CMakeLists.txt
+2 −1 gatb-core/scripts/delivery_check_repo.sh
+2 −1 gatb-core/src/CMakeLists.txt
+1 −1 gatb-core/src/gatb/bcalm2/bcalm_algo.cpp
+18 −7 gatb-core/src/gatb/debruijn/impl/Graph.cpp
+3 −0 gatb-core/src/gatb/debruijn/impl/Graph.hpp
+23 −14 gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
+1 −1 gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp
+11 −12 gatb-core/src/gatb/debruijn/impl/Simplifications.cpp
+1 −0 gatb-core/src/gatb/kmer/impl/CountProcessor.hpp
+296 −0 gatb-core/src/gatb/kmer/impl/CountProcessorDumpKff.hpp
+3 −3 gatb-core/src/gatb/kmer/impl/CountProcessorHistogram.hpp
+6 −3 gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp
+3 −3 gatb-core/src/gatb/kmer/impl/PartiInfo.hpp
+12 −12 gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp
+36 −0 gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp
+1 −0 gatb-core/src/gatb/system/impl/ThreadLinux.cpp
+6 −0 gatb-core/src/gatb/tools/misc/api/Data.hpp
+2 −0 gatb-core/src/gatb/tools/misc/api/StringsRepository.hpp
+1 −1 gatb-core/src/gatb/tools/misc/api/Vector.hpp
+1 −1 gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp
+8 −1 gatb-core/test/jenkins/publish-doc-api.sh
+17 −7 gatb-core/test/jenkins/test-suite-debian7-64bits-gcc-4.7.sh
+6 −7 gatb-core/test/jenkins/test-suite-macos-10.9.5-gcc-4.2.1.sh
+6 −1 gatb-core/thirdparty/CMakeLists.txt
+1 −1 gatb-core/thirdparty/hdf5/CMakeLists.txt
+29 −0 gatb-core/thirdparty/kff-cpp-api/CMakeLists.txt
+661 −0 gatb-core/thirdparty/kff-cpp-api/LICENSE
+390 −0 gatb-core/thirdparty/kff-cpp-api/README.md
+1,614 −0 gatb-core/thirdparty/kff-cpp-api/kff_io.cpp
+606 −0 gatb-core/thirdparty/kff-cpp-api/kff_io.hpp
+606 −0 gatb-core/thirdparty/kff-cpp-api/kff_io.hpp.in
+236 −0 gatb-core/thirdparty/kff-cpp-api/main.cpp
+213 −0 gatb-core/thirdparty/kff-cpp-api/merge.cpp
+18 −0 gatb-core/thirdparty/kff-cpp-api/merge.hpp

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