v1.7.1

v1.7.1 (2024-11-11)

Bug Fixes

• Remove debug print statements from find_by_display_name function, worms test (092d807)

Chores

• Update CI/CD workflow to set PATH for Rye installation (6959642)

v1.7.0

v1.7.0 (2024-11-04)

Chores

• chore: add docs rye script for building docs (66e97f5)

• chore: swap Poetry for Rye build system (e698cd6)

Code Style

• style: apply ruff linting & formatting (1bdc3d8)

Documentation

• docs: slight tweaks to README.md (0895d5c)

• docs: fix badge display in README.md (7c6dd4b)

• docs: update README.md with badges (2fe5256)

• docs: add CONTRIBUTING.md (befbcf0)

Features

• feat: add function to retrieve owner institution codes by image UUID (773290a)

v1.6.1

v1.6.1 (2024-08-01)

Fix

• fix: fix bbox conversion to Pascal VOC to use 1-based pixel index (440afb0)

v1.6.0

v1.6.0 (2024-07-18)

Feature

• feat: allow a start page number in fathomnet.util.page (62ca914)

v1.5.1

v1.5.1 (2024-07-16)

Fix

• fix: fix typo in -f option for fathomnet-generate (c304ce1)

v1.5.0

v1.5.0 (2024-07-16)

Chore

• chore: apply pre-commit hook on all files (0190345)

• chore: add Python 3.12 to CI pipeline targets (cf979cf)

• chore: add formatting/linting pre-commit setup (ca07b19)

Documentation

• docs: move tutorial notebook into examples dir (c4db176)

• docs: switch order of imports/pip install in tutorial notebook

switched order of imports to avoid ipyleaflet error with fathomnet install and added explanation on running outside of colab. (#28) (48afc49)

• docs: fix broken readthedocs build #27

Install the current package (fathomnet-py) prior to building the Sphinx docs via RTD (3154b79)

Feature

• feat: add YOLO dataset generation to fathomnet-generate (1bacb1f)

Fix

• fix: make TEST_X_API_KEY use an environment variable of the same name (22508cf)

Unknown

• Merge branch 'develop' (8202949)

• Merge branch 'main' into develop (4a29a68)

• add accepted flag to worms.get_descendants_names

Add support for worms-server 0.5.2 (0dc9ed8)

v1.4.0

v1.4.0 (2024-04-09)

Feature

• feat: add accepted flag to worms.get_descendants_names

Add support for worms-server 0.5.2 (de0aec2)

v1.3.0

v1.3.0 (2024-02-29)

Feature

• feat: support worms-server 0.5.1

Add support for worms-server 0.5.1. This adds the acceptedAphiaId field to the WormsNode DTOs as well as a new endpoint for getting a WormsNames DTO by Aphia ID. (f1989bc)

v1.2.2

v1.2.2 (2024-02-21)

Chore

• chore: add missing v for ref spec (3212b13)

Documentation

• docs: add worms API module documentation (11c0112)

Fix

• fix: correct typo in WormsNode.aphiaId

Fixes #25 (5feeeb0)

v1.2.1

v1.2.1 (2024-02-06)

Chore

• chore: use released ref for publish in CI/CD pipeline (d39c482)

Fix

• fix: use worms API directly for fathomnet taxa provider

This is a temporary workaround for a bug in Micronaut that causes the fathomnet taxa provider to fail for large trees (e.g., Scleractinia). (f887a95)

Unknown

• Merge branch 'main' into develop (86c574e)