Add files via upload

scripts/register_init_epi_win.m

@@ -0,0 +1,35 @@
+close all; clear all;
+
+subject='s002';
+hemi='rh';
+surf='white';
+
+
+file_overlay_register='./bb_register_init.dat';
+file_overlay_vol='epi_005_f.mgh';
+overlay_threshold=[];
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+%setenv('SUBJECTS_DIR','/Users/fhlin/workspace/eegmri_music/subjects/'); %for MAC/Linux
+setenv('SUBJECTS_DIR','C:\Users\sr810\workspace\eegmri_music\subjects'); %for PC
+
+%mri=MRIread(sprintf('/Users/fhlin/workspace/eegmri_music/subjects/%s/mri/orig.mgh',subject)); %for MAC/Linux
+mri=etc_MRIread('C:\Users\sr810\workspace\eegmri_music\subjects\s002\mri\orig.mgh'); %for PC
+
+%load the Talairach transformation matrix from the "pre-OP" data
+talxfm=etc_read_xfm('file_xfm',sprintf('%s/%s/mri/transforms/talairach.xfm',getenv('SUBJECTS_DIR'),subject)); %for MAC/Linux
+%talxfm=etc_read_xfm('file_xfm','D:\fhlin\Users\fhlin\workspace\seeg\subjects\2036\mri\transforms\talairach.xfm'); %for PC
+
+%%% volume overlay
+f=MRIread(file_overlay_vol);
+
+r=etc_read_xfm('file_xfm',file_overlay_register);
+
+%prepare overlay volume matched to the underlay volume
+vol = etc_MRIvol2vol(f,mri,r,'frames',[1]); %only the first volume
+
+%prepare overlay surface
+vol2surf = etc_MRIvol2surf(f,surf,r,'subject',subject,'frames',[1],'hemi',hemi);
+
+%etc_render_fsbrain('surf',surf,'hemi',hemi,'subject',subject,'vol',mri,'talxfm',(talxfm),'overlay_vol',vol,'overlay_value',vol2surf,'overlay_vertex',[1:size(vol2surf,1)]-1,'overlay_threshold',overlay_threshold,'overlay_flag_paint_on_cortex',0);
+etc_render_fsbrain('surf',surf,'hemi',hemi,'subject',subject,'vol',mri,'talxfm',(talxfm),'overlay_vol',vol,'overlay_threshold',overlay_threshold,'overlay_flag_paint_on_cortex',0);