tests: github tests worflow + to_mne and trc tests

.github/workflows/tests.yml

@@ -0,0 +1,40 @@
+name: tests
+
+on:
+  push:
+    branches:
+      - '*'
+  pull_request:
+    branches:
+      - '*'
+
+jobs:
+  tests:
+    runs-on: ${{ matrix.os }}
+    env:
+      CONDA_ENV: 'environment.yml'
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.11"]
+      os: [ubuntu-latest, windows-latest]
+
+    name: tests_python-${{ matrix.python-version }}
+    steps:
+      - uses: actions/checkout@v3
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          activate-environment: 'mmio'
+          python-version: ${{ matrix.python-version }}
+          environment-file: ${{ env.CONDA_ENV }}
+      - name: Install extra dependencies
+        shell: bash -el {0}
+        run: poetry install --with dev
+      - name: Test with pytest
+        shell: bash -el {0}
+        run: |
+          pytest micromed_io --cov=micromed_io --cov-report=xml --doctest-modules tests/
+      - name: Upload coverage stats
+        uses: codecov/codecov-action@v3
+        with:
+          file: ./coverage.xml
+

micromed_io/to_mne.py

@@ -53,7 +53,7 @@ def create_mne_from_micromed_recording(
     Examples
     --------
     >>> from micromed_io.to_mne import create_mne_from_micromed_recording
-    >>> mne_raw = create_mne_from_micromed_recording("path/to/file.TRC", start_time=10.0, stop_time=20.0)
+    >>> mne_raw = create_mne_from_micromed_recording("path/to/file.TRC", start_time=10.0, stop_time=20.0) #doctest: +SKIP
 
     """
     micromed_trc = MicromedTRC(recording_file)

pyproject.toml

@@ -11,8 +11,6 @@ mne = "^1.0.0"
 click = "^8.1.7"
 pylsl = "^1.16.2"
 
-[tool.poetry.dev-dependencies]
-pytest = "^5.2"
 
 [tool.poetry.scripts]
 mmio_emulate_trc = "micromed_io.scripts.emulate_online_trc:run"
@@ -25,6 +23,8 @@ sphinx-copybutton = "^0.5.2"
 numpydoc = "^1.6.0"
 pydata-sphinx-theme = "^0.14.4"
 sphinx-gallery = "^0.15.0"
+pytest = "^7.4.4"
+pytest-cov = "^4.1.0"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]