uenv hdf5

.github/linters/.flake8

@@ -0,0 +1,2 @@
+[flake8]
+select = F401

.github/workflows/main.yml

@@ -0,0 +1,17 @@
+name: ReFrame CI
+
+on: [push, pull_request]
+
+jobs:
+  codechecker:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Lint Code Base
+      uses: github/super-linter@v4
+      env:
+        VALIDATE_ALL_CODEBASE: false
+        VALIDATE_PYTHON_FLAKE8: true
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

checks/microbenchmarks/cpu/simd/nsimd.py

@@ -32,19 +32,17 @@ class NsimdTest(rfm.RegressionTest):
           * num_tasks: 1
           * speedup: 12.306 x (ns)
     '''
-    bench_name = parameter(['mul.avx2.f32.cpp', 'mul.avx2.f64.cpp'])
-
-    valid_systems = ['dom:mc', 'dom:gpu', 'eiger:mc']
+    bench_name = parameter(['mul.avx2.f64.cpp'])
+    valid_systems = ['*']
     valid_prog_environs = ['PrgEnv-gnu']
     build_system = 'SingleSource'
-
     # c++ test code generated with:
     #   python3 egg/hatch.py --benches --simd avx2 -m mul
     # and benches.hpp copied from:
     #   https://github.com/agenium-scale/nsimd/blob/master/benches/
     sourcesdir = 'benches'
     modules = ['nsimd', 'googlebenchmark', 'sleef', 'MIPP']
-    maintainers = ['JG']
+    maintainers = ['@jgphpc']
     exclusive = True
     num_tasks = 1
     num_tasks_per_node = 1
@@ -60,6 +58,10 @@ class NsimdTest(rfm.RegressionTest):
     def set_descr(self):
         self.descr = f'testing {self.bench_name}'
 
+    @run_before('compile')
+    def skip_test(self):
+        self.skip_if(True, 'skipping legacy test (nsimd no longer installed)')
+
     @run_before('compile')
     def setup_build(self):
         self.sourcepath = self.bench_name

checks/prgenv/environ_check.py

@@ -22,7 +22,7 @@ class DefaultPrgEnvCheck(rfm.RunOnlyRegressionTest):
 
     @run_after('init')
     def load_cray_module(self):
-        if self.current_system.name in ['hohgant', 'pilatus']:
+        if self.current_system.name in ['hohgant', 'eiger', 'pilatus']:
             self.modules = ['cray']
 
     @run_before('sanity')
@@ -102,7 +102,7 @@ class CrayVariablesCheckEiger(CrayVariablesCheck):
 
     @run_after('init')
     def load_cray_module(self):
-        if self.current_system.name in ['hohgant', 'pilatus']:
+        if self.current_system.name in ['hohgant', 'eiger', 'pilatus']:
             self.modules = ['cray']
 
     @run_after('init')

checks/system/io/ior_check.py

@@ -112,7 +112,7 @@ def set_valid_systems(self):
 
     @run_after('init')
     def load_cray_module(self):
-        if self.current_system.name in ['pilatus']:
+        if self.current_system.name in ['eiger', 'pilatus']:
             self.modules = ['cray']
 
     @run_before('compile')

config/systems/eiger.py

@@ -44,7 +44,7 @@
                 },
                 {
                     'type': 'Singularity',
-                    'modules': ['singularity/3.5.3-eiger']
+                    'modules': ['cray', 'singularity/3.6.4-eiger']
                 }
             ],
             'environs': [
@@ -100,51 +100,50 @@
     }
 )
 
-
 site_configuration = {
     'systems': [
-        eiger_sys,
+        eiger_sys
     ],
     'environments': [
         {
             'name': 'PrgEnv-aocc',
             'target_systems': ['eiger'],
-            'modules': ['PrgEnv-aocc']
+            'modules': ['cray', 'PrgEnv-aocc']
         },
         {
             'name': 'PrgEnv-cray',
             'target_systems': ['eiger'],
-            'modules': ['PrgEnv-cray']
+            'modules': ['cray', 'PrgEnv-cray']
         },
         {
             'name': 'PrgEnv-gnu',
             'target_systems': ['eiger'],
-            'modules': ['PrgEnv-gnu']
+            'modules': ['cray', 'PrgEnv-gnu']
         },
         {
             'name': 'PrgEnv-intel',
             'target_systems': ['eiger'],
-            'modules': ['PrgEnv-intel']
+            'modules': ['cray', 'PrgEnv-intel']
         },
         {
             'name': 'cpeAMD',
             'target_systems': ['eiger'],
-            'modules': ['cpeAMD']
+            'modules': ['cray', 'cpeAMD']
         },
         {
             'name': 'cpeCray',
             'target_systems': ['eiger'],
-            'modules': ['cpeCray']
+            'modules': ['cray', 'cpeCray']
         },
         {
             'name': 'cpeGNU',
             'target_systems': ['eiger'],
-            'modules': ['cpeGNU']
+            'modules': ['cray', 'cpeGNU']
         },
         {
             'name': 'cpeIntel',
             'target_systems': ['eiger'],
-            'modules': ['cpeIntel']
+            'modules': ['cray', 'cpeIntel']
         },
     ],
 }

config/systems/pilatus.py

@@ -44,7 +44,7 @@
                 },
                 {
                     'type': 'Singularity',
-                    'modules': ['cray', 'singularity/3.5.3-eiger']
+                    'modules': ['cray', 'singularity/3.6.4-eiger']
                 }
             ],
             'environs': [

uenv_checks/libraries/io/hdf5.py

@@ -0,0 +1,51 @@
+# Copyright 2016-2023 Swiss National Supercomputing Centre (CSCS/ETH Zurich)
+# ReFrame Project Developers. See the top-level LICENSE file for details.
+#
+# SPDX-License-Identifier: BSD-3-Clause
+
+import reframe as rfm
+import reframe.utility.osext as osext
+import reframe.utility.sanity as sn
+
+
+@rfm.simple_test
+class HDF5Test(rfm.RegressionTest):
+    """
+    Create a file and dataset and select/read a subset from the dataset
+    https://portal.hdfgroup.org/display/HDF5/Examples+from+Learning+the+Basics
+    """
+    lang = parameter(['cpp', 'f90'])
+    valid_systems = ['+remote']
+    valid_prog_environs = ['+mpi', '+hdf5']
+    build_system = 'SingleSource'
+    build_locally = False
+    num_tasks = 1
+    postrun_cmds = ['h5ls *.h5']
+    tags = {'production', 'craype', 'health'}
+
+    @run_before('compile')
+    def set_source(self):
+        repo = 'https://raw.githubusercontent.com/HDFGroup/hdf5/develop'
+        src = {
+            'cpp': 'c++/examples/h5tutr_subset.cpp',
+            'f90': 'fortran/examples/h5_subset.f90'
+        }
+        pkgconfig = {
+            'cpp': '`pkg-config --libs hdf5_cpp`',
+            'f90': '`pkg-config --libs hdf5_fortran`'
+        }
+        self.sourcepath = src[self.lang].split("/")[-1]
+        self.build_system.cppflags = ['`pkg-config --cflags hdf5`']
+        self.build_system.ldflags = [
+            pkgconfig[self.lang],
+            '-Wl,-rpath,`pkg-config --variable=libdir hdf5`'
+        ]
+
+    @run_before('sanity')
+    def set_sanity(self):
+        self.sanity_patterns = sn.assert_found(r'IntArray\s+Dataset \{8, 10\}',
+                                               self.stdout)
+
+    # NOTE: keeping (reference to old workarounds) as reminder:
+    # https://github.com/eth-cscs/cscs-reframe-tests/blob/v23.05/checks/
+    # -> libraries/io/hdf5_compile_run.py#L51

uenv_checks/libraries/io/src/h5_subset.f90

@@ -0,0 +1 @@
+../../../../checks/libraries/io/src/h5_subset.f90

uenv_checks/libraries/io/src/h5tutr_subset.cpp

@@ -0,0 +1 @@
+../../../../checks/libraries/io/src/h5tutr_subset.cpp