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jordibc committed Oct 20, 2023
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6 changes: 4 additions & 2 deletions genindex.html
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Expand Up @@ -444,10 +444,10 @@ <h2 id="S">S</h2>
</li>
<li><a href="reference/reference_phylo.html#ete4.PhyloTree.set_species_naming_function">set_species_naming_function() (PhyloTree method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="reference/reference_tree.html#ete4.Tree.set_style">set_style() (Tree method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="reference/reference_tree.html#ete4.Tree.show">show() (Tree method)</a>
</li>
<li><a href="reference/reference_clustering.html#ete4.clustering.clustertree.ClusterTree.silhouette">silhouette (ClusterTree property)</a>
Expand All @@ -465,6 +465,8 @@ <h2 id="S">S</h2>
<li><a href="reference/reference_tree.html#ete4.Tree.standardize">standardize() (Tree method)</a>
</li>
<li><a href="reference/reference_tree.html#ete4.Tree.support">support (Tree attribute)</a>
</li>
<li><a href="reference/reference_tree.html#ete4.Tree.swap_children">swap_children() (Tree method)</a>
</li>
</ul></td>
</tr></table>
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8 changes: 7 additions & 1 deletion reference/reference_tree.html
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Expand Up @@ -690,7 +690,7 @@ <h1>Tree (main class)<a class="headerlink" href="#tree-main-class" title="Link t

<dl class="py method">
<dt class="sig sig-object py" id="ete4.Tree.ladderize">
<span class="sig-name descname"><span class="pre">ladderize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">direction</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ete4.Tree.ladderize" title="Link to this definition"></a></dt>
<span class="sig-name descname"><span class="pre">ladderize</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">reverse</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ete4.Tree.ladderize" title="Link to this definition"></a></dt>
<dd><p>Sort branches according to the size of each partition.</p>
<p>Example:</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">t</span> <span class="o">=</span> <span class="n">Tree</span><span class="p">(</span><span class="s1">&#39;(f,((d,((a,b),c)),e));&#39;</span><span class="p">)</span>
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<span class="sig-name descname"><span class="pre">support</span></span><a class="headerlink" href="#ete4.Tree.support" title="Link to this definition"></a></dt>
<dd></dd></dl>

<dl class="py method">
<dt class="sig sig-object py" id="ete4.Tree.swap_children">
<span class="sig-name descname"><span class="pre">swap_children</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#ete4.Tree.swap_children" title="Link to this definition"></a></dt>
<dd><p>Like reverse, but if there are only two children.</p>
</dd></dl>

<dl class="py method">
<dt class="sig sig-object py" id="ete4.Tree.to_str">
<span class="sig-name descname"><span class="pre">to_str</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">show_internal</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compact</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">props</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">px</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">py</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">px0</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">waterfall</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#ete4.Tree.to_str" title="Link to this definition"></a></dt>
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2 changes: 1 addition & 1 deletion searchindex.js

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