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add labs and code reusing for simplicity. #1

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173 changes: 68 additions & 105 deletions whogrowthcharts.R
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
# weight for age
# boys
wfa.b.z <- read.csv("wfa-b-z.csv")
ggplot(wfa.b.z, aes(x=Month)) +
bwplot <- ggplot(wfa.b.z, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
Expand All @@ -33,35 +33,20 @@
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=28), fill = "#D55E00",alpha = 0.10)

wfa.b.z.6 <- subset(wfa.b.z, wfa.b.z$Month<=6)
ggplot(wfa.b.z.6, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
geom_line(aes(y=SD1), colour="#009E73") +
geom_line(aes(y=SD2), colour="#E69F00") +
geom_line(aes(y=SD3), colour="#D55E00") +
theme_bw() +
scale_x_continuous(expand=c(0,0),
breaks = c(0,1,2,6),
minor_breaks = seq(1, 6, 1)) +
scale_y_continuous(expand=c(0,0),
breaks = c(seq(0, 12, 1)),
minor_breaks = seq(0, 12, 0.5)) +
geom_vline(xintercept = c(1,2,6),
linetype="longdash", colour="#999999") +
ylab("Weight (Kg)") +
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=0, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=12), fill = "#D55E00",alpha = 0.10)


bwplot +
labs(title = "Weight for age",
subtitle = "Boys",
caption = "From 0 to 60 months")

bwplot + coord_cartesian(xlim = c(0, 6), ylim = c(0, 12)) +
labs(title = "Weight for age",
subtitle = "Boys",
caption = "From 0 to 6 months")

# girls
wfa.g.z <- read.csv("wfa-g-z.csv")
ggplot(wfa.g.z, aes(x=Month)) +
gwplot <- ggplot(wfa.g.z, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
Expand All @@ -83,37 +68,22 @@
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=30), fill = "#D55E00",alpha = 0.10)
geom_ribbon(aes(ymin=SD3, ymax=30), fill = "#D55E00",alpha = 0.10)

wfa.g.z.6 <- subset(wfa.g.z, wfa.g.z$Month<=6)
ggplot(wfa.g.z.6, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
geom_line(aes(y=SD1), colour="#009E73") +
geom_line(aes(y=SD2), colour="#E69F00") +
geom_line(aes(y=SD3), colour="#D55E00") +
theme_bw() +
scale_x_continuous(expand=c(0,0),
breaks = c(0,1,2,6),
minor_breaks = seq(1, 6, 1)) +
scale_y_continuous(expand=c(0,0),
breaks = c(seq(0, 14, 1)),
minor_breaks = seq(0, 14, 0.5)) +
geom_vline(xintercept = c(1,2,6),
linetype="longdash", colour="#999999") +
ylab("Weight (Kg)") +
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=0, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=14), fill = "#D55E00",alpha = 0.10)
gwplot +
labs(title = "Weight for age",
subtitle = "Girls",
caption = "From 0 to 60 months")

gwplot + coord_cartesian(xlim = c(0, 6), ylim = c(0, 12)) +
labs(title = "Weight for age",
subtitle = "Girls",
caption = "From 0 to 6 months")

# length for age
# boys
lfa.b.z <- read.csv("lfa-b-z.csv")
ggplot(lfa.b.z, aes(x=Month)) +
blplot <- ggplot(lfa.b.z, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
Expand All @@ -132,33 +102,19 @@
ylab("Length (cm)") +
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=40, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10)
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=100), fill = "#D55E00",alpha = 0.10)

blplot +
labs(title = "Lenght for age",
subtitle = "Boys",
caption = "From 0 to 24 months")

lfa.b.z.6 <- subset(lfa.b.z, lfa.b.z$Month<=6)
ggplot(lfa.b.z.6, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
geom_line(aes(y=SD1), colour="#009E73") +
geom_line(aes(y=SD2), colour="#E69F00") +
geom_line(aes(y=SD3), colour="#D55E00") +
theme_bw() +
scale_x_continuous(expand=c(0,0),
breaks = c(0,1,2,6),
minor_breaks = seq(1, 6, 1)) +
scale_y_continuous(expand=c(0,0),
breaks = c(seq(40, 90, 5)),
minor_breaks = seq(40, 90, 0.5)) +
geom_vline(xintercept = c(1,2,6),
linetype="longdash", colour="#999999") +
ylab("Length (cm)") +
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=40, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10)

# girls
lfa.g.z <- read.csv("lfa-g-z.csv")
ggplot(lfa.g.z, aes(x=Month)) +
wlplot <- ggplot(lfa.g.z, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
Expand All @@ -177,34 +133,20 @@
ylab("Length (cm)") +
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=40, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10)
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=100), fill = "#D55E00",alpha = 0.10)

wlplot +
labs(title = "Lenght for age",
subtitle = "Girls",
caption = "From 0 to 24 months")

lfa.g.z.6 <- subset(lfa.g.z, lfa.g.z$Month<=6)
ggplot(lfa.g.z.6, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
geom_line(aes(y=SD1), colour="#009E73") +
geom_line(aes(y=SD2), colour="#E69F00") +
geom_line(aes(y=SD3), colour="#D55E00") +
theme_bw() +
scale_x_continuous(expand=c(0,0),
breaks = c(0,1,2,6),
minor_breaks = seq(1, 6, 1)) +
scale_y_continuous(expand=c(0,0),
breaks = c(seq(40, 90, 5)),
minor_breaks = seq(40, 90, 0.5)) +
geom_vline(xintercept = c(1,2,6),
linetype="longdash", colour="#999999") +
ylab("Length (cm)") +
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=40, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10)

# height for age
# boys
hfa.b.z <- read.csv("hfa-b-z.csv")
ggplot(hfa.b.z, aes(x=Month)) +
bhplot <- ggplot(hfa.b.z, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
Expand All @@ -221,11 +163,21 @@
geom_vline(xintercept = c(24, 36, 48, 60),
linetype="longdash", colour="#999999") +
ylab("Height (cm)") +
theme(panel.border = element_blank())
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=75, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=130), fill = "#D55E00",alpha = 0.10)

bhplot +
labs(title = "Height for age",
subtitle = "Boys",
caption = "From 24 to 60 months")

# girls
hfa.g.z <- read.csv("hfa-g-z.csv")
ggplot(hfa.g.z, aes(x=Month)) +
ghplot <- ggplot(hfa.g.z, aes(x=Month)) +
geom_line(aes(y=SD3neg), colour="#D55E00") +
geom_line(aes(y=SD2neg), colour="#E69F00") +
geom_line(aes(y=SD1neg), colour="#009E73") +
Expand All @@ -242,4 +194,15 @@
geom_vline(xintercept = c(24, 36, 48, 60),
linetype="longdash", colour="#999999") +
ylab("Height (cm)") +
theme(panel.border = element_blank())
theme(panel.border = element_blank()) +
geom_ribbon(aes(ymin=75, ymax=SD3neg), fill = "#D55E00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3neg, ymax=SD1neg), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1neg, ymax=SD1), fill = "#009E73",alpha = 0.10) +
geom_ribbon(aes(ymin=SD1, ymax=SD3), fill = "#E69F00",alpha = 0.10) +
geom_ribbon(aes(ymin=SD3, ymax=125), fill = "#D55E00",alpha = 0.10)

ghplot +
labs(title = "Height for age",
subtitle = "Girls",
caption = "From 24 to 60 months")