Skip to content

Commit

Permalink
Deployed from erf-model/ERF
Browse files Browse the repository at this point in the history
  • Loading branch information
asalmgren committed Aug 13, 2024
1 parent c8c29d2 commit c4cff6a
Show file tree
Hide file tree
Showing 248 changed files with 7,712 additions and 7,376 deletions.
698 changes: 355 additions & 343 deletions ABLMost_8H_source.html

Large diffs are not rendered by default.

10 changes: 5 additions & 5 deletions ERF_8H_source.html
Original file line number Diff line number Diff line change
Expand Up @@ -1077,12 +1077,12 @@
<div class="line"><a name="l00989"></a><span class="lineno"><a class="line" href="classERF.html#a7d245afb7b3236b5967902f50bf9000b"> 989</a></span>&#160; amrex::Vector&lt;amrex::Gpu::DeviceVector&lt;amrex::Real&gt; &gt; <a class="code" href="classERF.html#a7d245afb7b3236b5967902f50bf9000b">d_v_geos</a>;</div>
<div class="line"><a name="l00990"></a><span class="lineno"> 990</span>&#160; </div>
<div class="line"><a name="l00991"></a><span class="lineno"> 991</span>&#160; <span class="comment">// Function to read and populate above host vectors (if input file exists)</span></div>
<div class="line"><a name="l00992"></a><span class="lineno"> 992</span>&#160; <span class="keywordtype">void</span> <a class="code" href="classERF.html#aacc932516cb277301951a8258545873c">init_geo_wind_profile</a> (<span class="keyword">const</span> std::string input_file,</div>
<div class="line"><a name="l00992"></a><span class="lineno"> 992</span>&#160; <span class="keywordtype">void</span> <a class="code" href="classERF.html#aab564dd3009ef83466b50db6d997b563">init_geo_wind_profile</a> (<span class="keyword">const</span> std::string input_file,</div>
<div class="line"><a name="l00993"></a><span class="lineno"> 993</span>&#160; amrex::Vector&lt;amrex::Real&gt;&amp; u_geos,</div>
<div class="line"><a name="l00994"></a><span class="lineno"> 994</span>&#160; amrex::Gpu::DeviceVector&lt;amrex::Real&gt;&amp; u_geos_d,</div>
<div class="line"><a name="l00995"></a><span class="lineno"> 995</span>&#160; amrex::Vector&lt;amrex::Real&gt;&amp; v_geos,</div>
<div class="line"><a name="l00996"></a><span class="lineno"> 996</span>&#160; amrex::Gpu::DeviceVector&lt;amrex::Real&gt;&amp; v_geos_d,</div>
<div class="line"><a name="l00997"></a><span class="lineno"> 997</span>&#160; <span class="keyword">const</span> amrex::Geometry&amp; geom,</div>
<div class="line"><a name="l00997"></a><span class="lineno"> 997</span>&#160; <span class="keyword">const</span> amrex::Geometry&amp; lgeom,</div>
<div class="line"><a name="l00998"></a><span class="lineno"> 998</span>&#160; <span class="keyword">const</span> amrex::Vector&lt;amrex::Real&gt;&amp; zlev_stag);</div>
<div class="line"><a name="l00999"></a><span class="lineno"> 999</span>&#160; </div>
<div class="line"><a name="l01000"></a><span class="lineno"> 1000</span>&#160; <span class="comment">// This is a vector over levels of vectors across quantities of Vectors</span></div>
Expand Down Expand Up @@ -1415,7 +1415,7 @@
<div class="ttc" id="aclassERF_html_a18e6dbbf968b4492e78aa427791620f4"><div class="ttname"><a href="classERF.html#a18e6dbbf968b4492e78aa427791620f4">ERF::ErrorEst</a></div><div class="ttdeci">void ErrorEst(int lev, amrex::TagBoxArray &amp;tags, amrex::Real time, int ngrow) override</div><div class="ttdef"><b>Definition:</b> ERF_Tagging.cpp:15</div></div>
<div class="ttc" id="aclassERF_html_a18fa84b06132715757d97ec38678aa2c"><div class="ttname"><a href="classERF.html#a18fa84b06132715757d97ec38678aa2c">ERF::plot_file_2</a></div><div class="ttdeci">std::string plot_file_2</div><div class="ttdef"><b>Definition:</b> ERF.H:836</div></div>
<div class="ttc" id="aclassERF_html_a199add69cee34c6611a5dc9ee965971c"><div class="ttname"><a href="classERF.html#a199add69cee34c6611a5dc9ee965971c">ERF::m_bc_extdir_vals</a></div><div class="ttdeci">amrex::Array&lt; amrex::Array&lt; amrex::Real, AMREX_SPACEDIM *2 &gt;, AMREX_SPACEDIM+NVAR_max &gt; m_bc_extdir_vals</div><div class="ttdef"><b>Definition:</b> ERF.H:784</div></div>
<div class="ttc" id="aclassERF_html_a19c8017ca1ff0eead61abd7e0ce62232"><div class="ttname"><a href="classERF.html#a19c8017ca1ff0eead61abd7e0ce62232">ERF::FillBdyCCVels</a></div><div class="ttdeci">void FillBdyCCVels(amrex::Vector&lt; amrex::MultiFab &gt; &amp;mf_cc_vel)</div><div class="ttdef"><b>Definition:</b> ERF_FillPatch.cpp:578</div></div>
<div class="ttc" id="aclassERF_html_a19c8017ca1ff0eead61abd7e0ce62232"><div class="ttname"><a href="classERF.html#a19c8017ca1ff0eead61abd7e0ce62232">ERF::FillBdyCCVels</a></div><div class="ttdeci">void FillBdyCCVels(amrex::Vector&lt; amrex::MultiFab &gt; &amp;mf_cc_vel)</div><div class="ttdef"><b>Definition:</b> ERF_FillPatch.cpp:579</div></div>
<div class="ttc" id="aclassERF_html_a1a2e3faf5dd90ad2f9ded28b486f3b46"><div class="ttname"><a href="classERF.html#a1a2e3faf5dd90ad2f9ded28b486f3b46">ERF::SFS_hfx3_lev</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; SFS_hfx3_lev</div><div class="ttdef"><b>Definition:</b> ERF.H:728</div></div>
<div class="ttc" id="aclassERF_html_a1a5d0d0b4e8c196f56dfab98f245aff5"><div class="ttname"><a href="classERF.html#a1a5d0d0b4e8c196f56dfab98f245aff5">ERF::h_w_subsid</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Vector&lt; amrex::Real &gt; &gt; h_w_subsid</div><div class="ttdef"><b>Definition:</b> ERF.H:982</div></div>
<div class="ttc" id="aclassERF_html_a1a8eb6bc00080cdbd8df28f6a321ac72"><div class="ttname"><a href="classERF.html#a1a8eb6bc00080cdbd8df28f6a321ac72">ERF::print_banner</a></div><div class="ttdeci">static void print_banner(MPI_Comm, std::ostream &amp;)</div><div class="ttdef"><b>Definition:</b> console_io.cpp:60</div></div>
Expand Down Expand Up @@ -1605,7 +1605,7 @@
<div class="ttc" id="aclassERF_html_aa89efe0abf37918ce3f212fb0e26f1bc"><div class="ttname"><a href="classERF.html#aa89efe0abf37918ce3f212fb0e26f1bc">ERF::turbPert_update</a></div><div class="ttdeci">void turbPert_update(const int lev, const amrex::Real dt)</div><div class="ttdef"><b>Definition:</b> ERF_init_TurbPert.cpp:15</div></div>
<div class="ttc" id="aclassERF_html_aa90c9756f684404f8b69b8a23568b535"><div class="ttname"><a href="classERF.html#aa90c9756f684404f8b69b8a23568b535">ERF::refinement_criteria_setup</a></div><div class="ttdeci">void refinement_criteria_setup()</div><div class="ttdef"><b>Definition:</b> ERF_Tagging.cpp:107</div></div>
<div class="ttc" id="aclassERF_html_aab4575d8fb57595a2f1aaf088c60447a"><div class="ttname"><a href="classERF.html#aab4575d8fb57595a2f1aaf088c60447a">ERF::bndry_output_planes_interval</a></div><div class="ttdeci">static int bndry_output_planes_interval</div><div class="ttdef"><b>Definition:</b> ERF.H:965</div></div>
<div class="ttc" id="aclassERF_html_aacc932516cb277301951a8258545873c"><div class="ttname"><a href="classERF.html#aacc932516cb277301951a8258545873c">ERF::init_geo_wind_profile</a></div><div class="ttdeci">void init_geo_wind_profile(const std::string input_file, amrex::Vector&lt; amrex::Real &gt; &amp;u_geos, amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &amp;u_geos_d, amrex::Vector&lt; amrex::Real &gt; &amp;v_geos, amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &amp;v_geos_d, const amrex::Geometry &amp;geom, const amrex::Vector&lt; amrex::Real &gt; &amp;zlev_stag)</div><div class="ttdef"><b>Definition:</b> ERF_init1d.cpp:409</div></div>
<div class="ttc" id="aclassERF_html_aab564dd3009ef83466b50db6d997b563"><div class="ttname"><a href="classERF.html#aab564dd3009ef83466b50db6d997b563">ERF::init_geo_wind_profile</a></div><div class="ttdeci">void init_geo_wind_profile(const std::string input_file, amrex::Vector&lt; amrex::Real &gt; &amp;u_geos, amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &amp;u_geos_d, amrex::Vector&lt; amrex::Real &gt; &amp;v_geos, amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &amp;v_geos_d, const amrex::Geometry &amp;lgeom, const amrex::Vector&lt; amrex::Real &gt; &amp;zlev_stag)</div><div class="ttdef"><b>Definition:</b> ERF_init1d.cpp:409</div></div>
<div class="ttc" id="aclassERF_html_aae7a3a76e08e54c618cf79b30ed2d73d"><div class="ttname"><a href="classERF.html#aae7a3a76e08e54c618cf79b30ed2d73d">ERF::RemakeLevel</a></div><div class="ttdeci">void RemakeLevel(int lev, amrex::Real time, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm) override</div><div class="ttdef"><b>Definition:</b> ERF_make_new_level.cpp:368</div></div>
<div class="ttc" id="aclassERF_html_aaee255b031e63bd9b5807f6612739dbd"><div class="ttname"><a href="classERF.html#aaee255b031e63bd9b5807f6612739dbd">ERF::GotoNextLine</a></div><div class="ttdeci">static void GotoNextLine(std::istream &amp;is)</div><div class="ttdef"><b>Definition:</b> Checkpoint.cpp:13</div></div>
<div class="ttc" id="aclassERF_html_aaf10bbf8c9a5dbc257a88c4c1b650fee"><div class="ttname"><a href="classERF.html#aaf10bbf8c9a5dbc257a88c4c1b650fee">ERF::MakeNewLevelFromScratch</a></div><div class="ttdeci">void MakeNewLevelFromScratch(int lev, amrex::Real time, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm) override</div><div class="ttdef"><b>Definition:</b> ERF_make_new_level.cpp:27</div></div>
Expand All @@ -1622,7 +1622,7 @@
<div class="ttc" id="aclassERF_html_ac1b9cce4a3c1736c4af78f6b0e2143ce"><div class="ttname"><a href="classERF.html#ac1b9cce4a3c1736c4af78f6b0e2143ce">ERF::turbPert</a></div><div class="ttdeci">TurbulentPerturbation turbPert</div><div class="ttdef"><b>Definition:</b> ERF.H:890</div></div>
<div class="ttc" id="aclassERF_html_ac1fa56ec90f44e3cdf487af46804163f"><div class="ttname"><a href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f">ERF::rW_old</a></div><div class="ttdeci">amrex::Vector&lt; amrex::MultiFab &gt; rW_old</div><div class="ttdef"><b>Definition:</b> ERF.H:679</div></div>
<div class="ttc" id="aclassERF_html_ac3f83ba16254a0efd4395900cef97efc"><div class="ttname"><a href="classERF.html#ac3f83ba16254a0efd4395900cef97efc">ERF::advance_lsm</a></div><div class="ttdeci">void advance_lsm(int lev, amrex::MultiFab &amp;, const amrex::Real &amp;dt_advance)</div><div class="ttdef"><b>Definition:</b> ERF_advance_lsm.cpp:5</div></div>
<div class="ttc" id="aclassERF_html_ac4497025ab94461899960ee067c2c72a"><div class="ttname"><a href="classERF.html#ac4497025ab94461899960ee067c2c72a">ERF::FillCoarsePatch</a></div><div class="ttdeci">void FillCoarsePatch(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_FillPatch.cpp:460</div></div>
<div class="ttc" id="aclassERF_html_ac4497025ab94461899960ee067c2c72a"><div class="ttname"><a href="classERF.html#ac4497025ab94461899960ee067c2c72a">ERF::FillCoarsePatch</a></div><div class="ttdeci">void FillCoarsePatch(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_FillPatch.cpp:461</div></div>
<div class="ttc" id="aclassERF_html_ac44e400a7ce68e18fa44e9416cb1344e"><div class="ttname"><a href="classERF.html#ac44e400a7ce68e18fa44e9416cb1344e">ERF::ClearLevel</a></div><div class="ttdeci">void ClearLevel(int lev) override</div><div class="ttdef"><b>Definition:</b> ERF_make_new_level.cpp:488</div></div>
<div class="ttc" id="aclassERF_html_ac81b3dfd7c6f21ba8479834e2ff1e652"><div class="ttname"><a href="classERF.html#ac81b3dfd7c6f21ba8479834e2ff1e652">ERF::ref_tags</a></div><div class="ttdeci">static amrex::Vector&lt; amrex::AMRErrorTag &gt; ref_tags</div><div class="ttdef"><b>Definition:</b> ERF.H:1033</div></div>
<div class="ttc" id="aclassERF_html_ac94ddee2f501dbcea2a516284b7119b5"><div class="ttname"><a href="classERF.html#ac94ddee2f501dbcea2a516284b7119b5">ERF::d_w_subsid</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; d_w_subsid</div><div class="ttdef"><b>Definition:</b> ERF.H:983</div></div>
Expand Down
4 changes: 2 additions & 2 deletions Interpolation__1D_8H.html
Original file line number Diff line number Diff line change
Expand Up @@ -261,7 +261,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a803d0d35d4ca4791556cbe02
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>&#160;}</div>
<div class="ttc" id="aDataStruct_8H_html_a627f1f843904477f763577ad1460de01a9dd4e461268c8034f5c8564e155c67a6"><div class="ttname"><a href="DataStruct_8H.html#a627f1f843904477f763577ad1460de01a9dd4e461268c8034f5c8564e155c67a6">Coord::x</a></div><div class="ttdeci">@ x</div></div>
</div><!-- fragment -->
<p class="reference">Referenced by <a class="el" href="ERF__init__from__input__sounding_8cpp.html#a3591f1ded54f05cbacb8d1ad6246572e">init_bx_scalars_from_input_sounding()</a>, <a class="el" href="ERF__init__from__input__sounding_8cpp.html#af361420f8bc21f523a05894f83c85604">init_bx_scalars_from_input_sounding_hse()</a>, <a class="el" href="ERF__init__from__input__sounding_8cpp.html#a3e2549542024fc00744ba8077f71f1fb">init_bx_velocities_from_input_sounding()</a>, <a class="el" href="classERF.html#a3079a30cce7e1a01d5c9705f393b5a63">ERF::init_Dirichlet_bc_data()</a>, <a class="el" href="classERF.html#aacc932516cb277301951a8258545873c">ERF::init_geo_wind_profile()</a>, <a class="el" href="structInputSoundingData.html#a596a65687875bb0172f0621f446452ae">InputSoundingData::read_from_file()</a>, <a class="el" href="structInputSpongeData.html#a8480886e7e481c5f83915d5feae62907">InputSpongeData::read_from_file()</a>, <a class="el" href="classERF.html#a0877d5a0263641c13b92d2d16f47b689">ERF::setRayleighRefFromSounding()</a>, <a class="el" href="classERF.html#ae27a45d751287a887769df20dea60633">ERF::setSpongeRefFromSounding()</a>, <a class="el" href="classEWP.html#a4f28000173748f88919eda5fbed1368e">EWP::source_terms_cellcentered()</a>, and <a class="el" href="classFitch.html#aa56821341be1cf4d01558e297993c0f2">Fitch::source_terms_cellcentered()</a>.</p>
<p class="reference">Referenced by <a class="el" href="ERF__init__from__input__sounding_8cpp.html#a3591f1ded54f05cbacb8d1ad6246572e">init_bx_scalars_from_input_sounding()</a>, <a class="el" href="ERF__init__from__input__sounding_8cpp.html#af361420f8bc21f523a05894f83c85604">init_bx_scalars_from_input_sounding_hse()</a>, <a class="el" href="ERF__init__from__input__sounding_8cpp.html#a3e2549542024fc00744ba8077f71f1fb">init_bx_velocities_from_input_sounding()</a>, <a class="el" href="classERF.html#a3079a30cce7e1a01d5c9705f393b5a63">ERF::init_Dirichlet_bc_data()</a>, <a class="el" href="classERF.html#aab564dd3009ef83466b50db6d997b563">ERF::init_geo_wind_profile()</a>, <a class="el" href="structInputSoundingData.html#a596a65687875bb0172f0621f446452ae">InputSoundingData::read_from_file()</a>, <a class="el" href="structInputSpongeData.html#a8480886e7e481c5f83915d5feae62907">InputSpongeData::read_from_file()</a>, <a class="el" href="classERF.html#a0877d5a0263641c13b92d2d16f47b689">ERF::setRayleighRefFromSounding()</a>, <a class="el" href="classERF.html#ae27a45d751287a887769df20dea60633">ERF::setSpongeRefFromSounding()</a>, <a class="el" href="classEWP.html#a4f28000173748f88919eda5fbed1368e">EWP::source_terms_cellcentered()</a>, and <a class="el" href="classFitch.html#aa56821341be1cf4d01558e297993c0f2">Fitch::source_terms_cellcentered()</a>.</p>
<div class="dynheader">
Here is the caller graph for this function:</div>
<div class="dyncontent">
Expand All @@ -272,7 +272,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a803d0d35d4ca4791556cbe02
<area shape="rect" href="ERF__init__from__input__sounding_8cpp.html#af361420f8bc21f523a05894f83c85604" title=" " alt="" coords="251,71,409,112"/>
<area shape="rect" href="ERF__init__from__input__sounding_8cpp.html#a3e2549542024fc00744ba8077f71f1fb" title=" " alt="" coords="247,136,413,177"/>
<area shape="rect" href="classERF.html#a3079a30cce7e1a01d5c9705f393b5a63" title=" " alt="" coords="261,201,399,243"/>
<area shape="rect" href="classERF.html#aacc932516cb277301951a8258545873c" title=" " alt="" coords="258,267,402,308"/>
<area shape="rect" href="classERF.html#aab564dd3009ef83466b50db6d997b563" title=" " alt="" coords="258,267,402,308"/>
<area shape="rect" href="structInputSoundingData.html#a596a65687875bb0172f0621f446452ae" title=" " alt="" coords="253,332,407,373"/>
<area shape="rect" href="structInputSpongeData.html#a8480886e7e481c5f83915d5feae62907" title=" " alt="" coords="245,397,415,439"/>
<area shape="rect" href="classERF.html#a0877d5a0263641c13b92d2d16f47b689" title="Set Rayleigh mean profiles from input sounding." alt="" coords="207,463,453,490"/>
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<area shape="rect" id="node4" href="$ERF__init__from__input__sounding_8cpp.html#af361420f8bc21f523a05894f83c85604" title=" " alt="" coords="251,71,409,112"/>
<area shape="rect" id="node5" href="$ERF__init__from__input__sounding_8cpp.html#a3e2549542024fc00744ba8077f71f1fb" title=" " alt="" coords="247,136,413,177"/>
<area shape="rect" id="node6" href="$classERF.html#a3079a30cce7e1a01d5c9705f393b5a63" title=" " alt="" coords="261,201,399,243"/>
<area shape="rect" id="node7" href="$classERF.html#aacc932516cb277301951a8258545873c" title=" " alt="" coords="258,267,402,308"/>
<area shape="rect" id="node7" href="$classERF.html#aab564dd3009ef83466b50db6d997b563" title=" " alt="" coords="258,267,402,308"/>
<area shape="rect" id="node8" href="$structInputSoundingData.html#a596a65687875bb0172f0621f446452ae" title=" " alt="" coords="253,332,407,373"/>
<area shape="rect" id="node9" href="$structInputSpongeData.html#a8480886e7e481c5f83915d5feae62907" title=" " alt="" coords="245,397,415,439"/>
<area shape="rect" id="node10" href="$classERF.html#a0877d5a0263641c13b92d2d16f47b689" title="Set Rayleigh mean profiles from input sounding." alt="" coords="207,463,453,490"/>
Expand Down
Original file line number Diff line number Diff line change
@@ -1 +1 @@
246f64441d33164d66f46d9051f902b6
4e323dff84afe7bbfae229d6db32e016
Loading

0 comments on commit c4cff6a

Please sign in to comment.