Deployed from erf-model/ERF

erf-model · Oct 9, 2024 · 96730c3 · 96730c3
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Showing 13 changed files with 2,765 additions and 2,702 deletions.
diff --git a/ERF_8H_source.html b/ERF_8H_source.html
diff --git a/ERF__init__from__input__sounding_8cpp.html b/ERF__init__from__input__sounding_8cpp.html
diff --git a/classERF-members.html b/classERF-members.html
@@ -414,9 +414,9 @@
  <tr class="even"><td class="entry"><a class="el" href="classERF.html#a39efa3a0f3ae3deb7a43f4ce110ee49a">write_1D_profiles_stag</a>(amrex::Real time)</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classERF.html#ae6afed5b3a72ca80ccf0d791b08516aa">writeBuildInfo</a>(std::ostream &amp;os)</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classERF.html#ad101fd46096db2d6b21544bfede6551f">WriteCheckpointFile</a>() const</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
- <tr><td class="entry"><a class="el" href="classERF.html#a16e49fd65c68e2afc2140bd9e97bcbe9">WriteGenericPlotfileHeaderWithTerrain</a>(std::ostream &amp;HeaderFile, int nlevels, const amrex::Vector&lt; amrex::BoxArray &gt; &amp;bArray, const amrex::Vector&lt; std::string &gt; &amp;varnames, amrex::Real time, const amrex::Vector&lt; int &gt; &amp;level_steps, const std::string &amp;versionName, const std::string &amp;levelPrefix, const std::string &amp;mfPrefix) const</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
+ <tr><td class="entry"><a class="el" href="classERF.html#a3a918bd26ed0c1dc2efa75c2586ff664">WriteGenericPlotfileHeaderWithTerrain</a>(std::ostream &amp;HeaderFile, int nlevels, const amrex::Vector&lt; amrex::BoxArray &gt; &amp;bArray, const amrex::Vector&lt; std::string &gt; &amp;varnames, const amrex::Vector&lt; amrex::Geometry &gt; &amp;my_geom, amrex::Real time, const amrex::Vector&lt; int &gt; &amp;level_steps, const amrex::Vector&lt; amrex::IntVect &gt; &amp;my_ref_ratio, const std::string &amp;versionName, const std::string &amp;levelPrefix, const std::string &amp;mfPrefix) const</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classERF.html#aa2d8099655a8779836e63e3e98ea4372">writeJobInfo</a>(const std::string &amp;dir) const</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
- <tr><td class="entry"><a class="el" href="classERF.html#a898410553492b2add00a72374dcec6ba">WriteMultiLevelPlotfileWithTerrain</a>(const std::string &amp;plotfilename, int nlevels, const amrex::Vector&lt; const amrex::MultiFab * &gt; &amp;mf, const amrex::Vector&lt; const amrex::MultiFab * &gt; &amp;mf_nd, const amrex::Vector&lt; std::string &gt; &amp;varnames, amrex::Real time, const amrex::Vector&lt; int &gt; &amp;level_steps, const std::string &amp;versionName=&quot;HyperCLaw-V1.1&quot;, const std::string &amp;levelPrefix=&quot;Level_&quot;, const std::string &amp;mfPrefix=&quot;Cell&quot;, const amrex::Vector&lt; std::string &gt; &amp;extra_dirs=amrex::Vector&lt; std::string &gt;()) const</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
+ <tr><td class="entry"><a class="el" href="classERF.html#a61510e69bdaee84a01cf33943b043a5c">WriteMultiLevelPlotfileWithTerrain</a>(const std::string &amp;plotfilename, int nlevels, const amrex::Vector&lt; const amrex::MultiFab * &gt; &amp;mf, const amrex::Vector&lt; const amrex::MultiFab * &gt; &amp;mf_nd, const amrex::Vector&lt; std::string &gt; &amp;varnames, const amrex::Vector&lt; amrex::Geometry &gt; &amp;my_geom, amrex::Real time, const amrex::Vector&lt; int &gt; &amp;level_steps, const amrex::Vector&lt; amrex::IntVect &gt; &amp;my_ref_ratio, const std::string &amp;versionName=&quot;HyperCLaw-V1.1&quot;, const std::string &amp;levelPrefix=&quot;Level_&quot;, const std::string &amp;mfPrefix=&quot;Cell&quot;, const amrex::Vector&lt; std::string &gt; &amp;extra_dirs=amrex::Vector&lt; std::string &gt;()) const</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">writeNow</a>(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classERF.html#a0b0b4140e117163895e5e2c89a68d12a">WritePlotFile</a>(int which, amrex::Vector&lt; std::string &gt; plot_var_names)</td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classERF.html#af044f075df34caa2a530aa13e1801a5b">xflux_imask</a></td><td class="entry"><a class="el" href="classERF.html">ERF</a></td><td class="entry"><span class="mlabel">private</span></td></tr>

diff --git a/classERF.html b/classERF.html
diff --git a/classERF.js b/classERF.js
@@ -125,9 +125,9 @@ var classERF =
  [ "write_1D_profiles_stag", "classERF.html#a39efa3a0f3ae3deb7a43f4ce110ee49a", null ],
  [ "writeBuildInfo", "classERF.html#ae6afed5b3a72ca80ccf0d791b08516aa", null ],
  [ "WriteCheckpointFile", "classERF.html#ad101fd46096db2d6b21544bfede6551f", null ],
- [ "WriteGenericPlotfileHeaderWithTerrain", "classERF.html#a16e49fd65c68e2afc2140bd9e97bcbe9", null ],
+ [ "WriteGenericPlotfileHeaderWithTerrain", "classERF.html#a3a918bd26ed0c1dc2efa75c2586ff664", null ],
  [ "writeJobInfo", "classERF.html#aa2d8099655a8779836e63e3e98ea4372", null ],
- [ "WriteMultiLevelPlotfileWithTerrain", "classERF.html#a898410553492b2add00a72374dcec6ba", null ],
+ [ "WriteMultiLevelPlotfileWithTerrain", "classERF.html#a61510e69bdaee84a01cf33943b043a5c", null ],
  [ "writeNow", "classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a", null ],
  [ "WritePlotFile", "classERF.html#a0b0b4140e117163895e5e2c89a68d12a", null ],
  [ "advflux_reg", "classERF.html#a86a0bc8e41668411ee0ab5801d4688a7", null ],

diff --git a/classMultiBlockContainer.html b/classMultiBlockContainer.html
@@ -391,7 +391,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a92e9b71087c94076b01f13b6
 <div class="line"><a name="l00184"></a><span class="lineno"> 184</span>&#160; amrex::NonLocalBC::ParallelCopy(<a class="code" href="classMultiBlockContainer.html#ac65a89fe2e12cff2c871d641f965e322">erf2</a>.<a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[0][dst_ind], <a class="code" href="classMultiBlockContainer.html#a1ee9fa78e0ade97253f818516df5d83d">erf1</a>.<a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[0][src_ind],</div>
 <div class="line"><a name="l00185"></a><span class="lineno"> 185</span>&#160; *(<a class="code" href="classMultiBlockContainer.html#ac2e558406e28ee31351eb60c7465d0ad">cmd</a>[dst_ind][j]), 0, 0, 1, <a class="code" href="classMultiBlockContainer.html#a537ef22d2809607f9d353b912eedffcf">dtos</a>);</div>
 <div class="line"><a name="l00186"></a><span class="lineno"> 186</span>&#160;}</div>
-<div class="ttc" id="aclassERF_html_a1204ca4dc5d79f5da191ffbe09dfab9b"><div class="ttname"><a href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">ERF::vars_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Vector&lt; amrex::MultiFab &gt; &gt; vars_new</div><div class="ttdef"><b>Definition:</b> ERF.H:669</div></div>
+<div class="ttc" id="aclassERF_html_a1204ca4dc5d79f5da191ffbe09dfab9b"><div class="ttname"><a href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">ERF::vars_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Vector&lt; amrex::MultiFab &gt; &gt; vars_new</div><div class="ttdef"><b>Definition:</b> ERF.H:673</div></div>
 <div class="ttc" id="aclassMultiBlockContainer_html_ac2e558406e28ee31351eb60c7465d0ad"><div class="ttname"><a href="classMultiBlockContainer.html#ac2e558406e28ee31351eb60c7465d0ad">MultiBlockContainer::cmd</a></div><div class="ttdeci">std::vector&lt; std::vector&lt; amrex::NonLocalBC::MultiBlockCommMetaData * &gt; &gt; cmd</div><div class="ttdef"><b>Definition:</b> ERF_MultiBlockContainer.H:43</div></div>
 </div><!-- fragment -->
 </div>

diff --git a/functions_func_w.html b/functions_func_w.html
@@ -146,13 +146,13 @@ <h3><a id="index_w"></a>- w -</h3><ul>
 : <a class="el" href="classERF.html#ad101fd46096db2d6b21544bfede6551f">ERF</a>
 </li>
 <li>WriteGenericPlotfileHeaderWithTerrain()
-: <a class="el" href="classERF.html#a16e49fd65c68e2afc2140bd9e97bcbe9">ERF</a>
+: <a class="el" href="classERF.html#a3a918bd26ed0c1dc2efa75c2586ff664">ERF</a>
 </li>
 <li>writeJobInfo()
 : <a class="el" href="classERF.html#aa2d8099655a8779836e63e3e98ea4372">ERF</a>
 </li>
 <li>WriteMultiLevelPlotfileWithTerrain()
-: <a class="el" href="classERF.html#a898410553492b2add00a72374dcec6ba">ERF</a>
+: <a class="el" href="classERF.html#a61510e69bdaee84a01cf33943b043a5c">ERF</a>
 </li>
 <li>writeNow()
 : <a class="el" href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">ERF</a>

diff --git a/functions_w.html b/functions_w.html
@@ -204,13 +204,13 @@ <h3><a id="index_w"></a>- w -</h3><ul>
 : <a class="el" href="classERF.html#ad101fd46096db2d6b21544bfede6551f">ERF</a>
 </li>
 <li>WriteGenericPlotfileHeaderWithTerrain()
-: <a class="el" href="classERF.html#a16e49fd65c68e2afc2140bd9e97bcbe9">ERF</a>
+: <a class="el" href="classERF.html#a3a918bd26ed0c1dc2efa75c2586ff664">ERF</a>
 </li>
 <li>writeJobInfo()
 : <a class="el" href="classERF.html#aa2d8099655a8779836e63e3e98ea4372">ERF</a>
 </li>
 <li>WriteMultiLevelPlotfileWithTerrain()
-: <a class="el" href="classERF.html#a898410553492b2add00a72374dcec6ba">ERF</a>
+: <a class="el" href="classERF.html#a61510e69bdaee84a01cf33943b043a5c">ERF</a>
 </li>
 <li>writeNow()
 : <a class="el" href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">ERF</a>

diff --git a/navtreedata.js b/navtreedata.js
@@ -76,7 +76,7 @@ var NAVTREEINDEX =
 "ERF__DiffusionSrcForState__N_8cpp.html#a61d842d8a45b6d97948ce19b106bba0a",
 "ERF__NCWpsFile_8H.html#a147911bcb83952a10f7560fd4e9d8f06aaa684fa862f886663c11fcad18416550",
 "ERF__fast__rhs__MT_8cpp.html",
-"classERF.html#a18c1142552120bbd22987f34995ee939",
+"classERF.html#a18e6dbbf968b4492e78aa427791620f4",
 "classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8",
 "classIntersectionCIF.html#abf356bbe64e8979330be6f8b3417a100",
 "classMamConstituents.html#a19309fc1bfd9a51b5ac412ba7f17734f",

diff --git a/navtreeindex3.js b/navtreeindex3.js
@@ -248,6 +248,6 @@ var NAVTREEINDEX3 =
 "classERF.html#a15af18ae136cf3a11bb63fe0cf3924c8":[2,0,22,87],
 "classERF.html#a15db5266359edba700f523f16da303a7":[2,0,22,182],
 "classERF.html#a16e1f6b8bbb05ae738daf2abe626c159":[2,0,22,18],
-"classERF.html#a16e49fd65c68e2afc2140bd9e97bcbe9":[2,0,22,125],
-"classERF.html#a18610f7aac948db169cf8a4642573027":[2,0,22,96]
+"classERF.html#a18610f7aac948db169cf8a4642573027":[2,0,22,96],
+"classERF.html#a18c1142552120bbd22987f34995ee939":[2,0,22,322]
 };
diff --git a/navtreeindex4.js b/navtreeindex4.js
@@ -1,6 +1,5 @@
 var NAVTREEINDEX4 =
 {
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 "classERF.html#a18e6dbbf968b4492e78aa427791620f4":[2,0,22,27],
 "classERF.html#a18fa84b06132715757d97ec38678aa2c":[2,0,22,259],
 "classERF.html#a19c8017ca1ff0eead61abd7e0ce62232":[2,0,22,33],
@@ -50,6 +49,7 @@ var NAVTREEINDEX4 =
 "classERF.html#a3937527f96c81674fa38dc34ed24f3f5":[2,0,22,276],
 "classERF.html#a393b540493795b8c6ee0f64634b8b815":[2,0,22,186],
 "classERF.html#a39efa3a0f3ae3deb7a43f4ce110ee49a":[2,0,22,122],
+"classERF.html#a3a918bd26ed0c1dc2efa75c2586ff664":[2,0,22,125],
 "classERF.html#a3b9bcb54c278dfec6027e9727cc01bc5":[2,0,22,166],
 "classERF.html#a3c5eca26a28dda3a981b3581abadfca0":[2,0,22,199],
 "classERF.html#a3cf7cb2e51eb7b69cb4079ffc6722459":[2,0,22,181],
@@ -103,6 +103,7 @@ var NAVTREEINDEX4 =
 "classERF.html#a60a185c47f07bf4fb537a15d5a226d8a":[2,0,22,319],
 "classERF.html#a60e8cb933f237903e3fbcd6376c26db0":[2,0,22,268],
 "classERF.html#a610a988f46e0496e6dbd0471ae817f75":[2,0,22,248],
+"classERF.html#a61510e69bdaee84a01cf33943b043a5c":[2,0,22,127],
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 "classERF.html#a63c64467bb933ddd2feff8b08e48b812":[2,0,22,49],
@@ -152,7 +153,6 @@ var NAVTREEINDEX4 =
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diff --git a/search/all_16.js b/search/all_16.js
diff --git a/search/functions_15.js b/search/functions_15.js