add preparation callout box with papers of reference

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Please read the following before the workshop begins:

On estimate transmission metrics

• Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput Biol. 2020 Dec 10;16(12):e1008409. doi: 10.1371/journal.pcbi.1008409. Erratum in: PLoS Comput Biol. 2021 Dec 8;17(12):e1009679. PMID: 33301457; PMCID: PMC7728287. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008409

  • specific section Gosnic et al., 2020 https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008409#sec015
  • specific section Charniga et al., 2024 https://www.sciencedirect.com/science/article/pii/S1755436524000161#sec0055

• On estimate outbreak severity
  Nishiura H, Klinkenberg D, Roberts M, Heesterbeek JA. Early epidemiological assessment of the virulence of emerging infectious diseases: a case study of an influenza pandemic. PLoS One. 2009 Aug 31;4(8):e6852. doi: 10.1371/journal.pone.0006852. PMID: 19718434; PMCID: PMC2729920. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006852

• On individual-level variation in transmission (i.e. superspreading potential)
  Althaus CL. Ebola superspreading. Lancet Infect Dis. 2015 May;15(5):507-8. doi: 10.1016/S1473-3099(15)70135-0. Epub 2015 Apr 19. PMID: 25932579; PMCID: PMC7158960. https://www.thelancet.com/journals/laninf/article/PIIS1473-3099%2815%2970135-0/fulltext