Merge branch 'master' into seabbs/issue85

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: EpiSoon
 Type: Package
 Title: Forecast Cases Using Reproduction Numbers
-Version: 0.3.0
+Version: 0.3.0.1000
 Authors@R: c(
  person(given = "Sam Abbott",
  role = c("aut", "cre"),
@@ -69,22 +69,21 @@ Imports:
  cowplot,
  HDInterval,
  R.utils
-Additional_repositories: 
- https://epiforecasts.io/drat/
 Remotes:
  nikosbosse/stackr
 Suggests: 
  knitr,
  rmarkdown,
+ fable,
  fabletools,
  tsibble,
  forecastHybrid,
  forecast,
  fable,
- bsts,
  feasts,
  future.apply,
  stackr,
+ bsts,
  brms,
  tidybayes,
  testthat,

NEWS.md

@@ -1,7 +1,13 @@
+# EpiSoon 0.3.1
+
+* Updated all GitHub Actions
+* Updated `tidyverse` code usage to account for depreciation.
+* Updated `pkgdown` site to use `pkgdown` 2.0.0.
+
 # EpiSoon 0.3.0
 
 * Reviewed and updated all tooling and examples
-* Added documentation 
+* Added documentation
 * Bugs squashed.
 
 # EpiSoon 0.2.0

_pkgdown.yml

@@ -1,28 +1,22 @@
 url: epiforecasts.io/EpiSoon/
 template:
+ bootstrap: 5
+ opengraph:
+ twitter:
+ creator: "@seabbs"
+ site: "@epiforecasts"
+ card: summary_large_image
  params:
  bootswatch: lumen
 
 development:
- mode: release
-
-navbar:
- type: inverse 
- left:
- - text: "Home"
- href: index.html
- - text: "Getting started"
- href: articles/introduction.html
- - text: News
- href: news/index.html
- - icon: fa-file-code-o
- text: "Functions"
- href: reference/index.html
- right:
- - icon: fa-github
- href: https://github.com/epiforecasts/EpiSoon
-
+ mode: auto
 
+authors:
+ Sam Abbott:
+ href: "https://www.samabbott.co.uk/"
+ Sebastian Funk: 
+ href: "https://www.lshtm.ac.uk/aboutus/people/funk.sebastian"
 
 reference:
  - title: Analysis wrappers
@@ -34,6 +28,7 @@ reference:
  - title: Forecast
  desc: Forecasting tools
  contents:
+ - forecast_model
  - forecast_rt
  - forecast_cases
  - forecast_cases_directly
@@ -69,6 +64,7 @@ reference:
  desc: Tools to plot forecasts
  contents:
  - plot_forecast
+ - plot_compare_timeseries
  - plot_forecast_evaluation
  - plot_scores
  - title: Example datasets

vignettes/introduction.Rmd

@@ -2,7 +2,7 @@
 title: "Getting started"
 output: rmarkdown::html_vignette
 vignette: >
- %\VignetteIndexEntry{introduction}
+ %\VignetteIndexEntry{Getting started}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
 ---