update python (#357)

* update python

* bump to v0.15.8

.flake8

@@ -3,4 +3,4 @@ max-line-length = 88
 select = C,E,F,W,B,B950
 ignore = E203, E501, W503
 exclude = *tests/*, *old_graph*, *.venv/*, entropylab/flame/example/complex/entropynodes/library/*, entropylab/flame/template/*
-per-file-ignores = __init__.py:F401
+per-file-ignores = __init__.py:F401, entropylab/components/instrument_driver.py:B027

.github/workflows/main.yml

@@ -22,11 +22,14 @@ jobs:
       version: ${{ steps.project-version.outputs.version }}
     env:
       JUNIT_REPORT_PATH: pytest-junit-report
+    strategy:
+      matrix:
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
     steps:
       - uses: actions/checkout@v2
       - uses: actions/setup-python@v1
         with:
-          python-version: 3.7
+          python-version: ${{ matrix.python-version }}
 
       - name: Setup pip Cache
         id: cache-pip
@@ -150,4 +153,4 @@ jobs:
       - name: Publish distribution 📦 to PyPI
         uses: pypa/[email protected]
         with:
-          password: ${{ secrets.PYPI_API_TOKEN }}
+          password: ${{ secrets.PYPI_API_TOKEN }}

CHANGELOG.md

@@ -6,6 +6,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.15.8]
+### Changed
+* supporting python versions 3.8, 3.9, 3.10, 3.11
+* removed unused python packages
+
 ## [0.15.7]
 ### Added
 * _dir__() method for ParamStore, adds Param keys to auto-complete

entropylab/pipeline/api/data_writer.py

@@ -199,6 +199,7 @@ def save_plot(self, experiment_id: int, plot: PlotSpec, data: Any):
         )
         pass
 
+    @abstractmethod
     def save_figure(self, experiment_id: int, figure: go.Figure) -> None:
         """
             save a new plotly figure to the db and associates it with an experiment

entropylab/pipeline/params/param_store.py

@@ -41,7 +41,7 @@ def __init__(self, value):
 
     def __eq__(self, other):
         if isinstance(self.value, np.ndarray):  # numpy arrays
-            if np.issubdtype(self.value.dtype, np.float):  # dtype float
+            if np.issubdtype(self.value.dtype, float):  # dtype float
                 return np.allclose(self.value, other.value, atol=1e-09, rtol=0.0)
             else:  # non-float dtype
                 return (self.value == other.value).all()

pyproject.toml

@@ -1,7 +1,7 @@
 [tool.poetry]
 name = "entropylab"
 
-version = "0.15.7"
+version = "0.15.8"
 
 description = ""
 license = "BSD-3-Clause"
@@ -33,7 +33,7 @@ entropy = 'entropylab.cli.main:main'
 n3p = 'entropylab.cli.main:main'
 
 [tool.poetry.dependencies]
-python = ">=3.7.1,<3.10"
+python = ">3.8,<4.0"
 sqlalchemy = "^1.4.0"
 bokeh = "^2.3.0"
 param = "^1.10.1"
@@ -42,7 +42,6 @@ pandas = "^1.2.3"
 numpy = "^1.19"
 jsonpickle = "^2.0.0"
 graphviz = "^0.16"
-networkx = "^2.6.0"
 matplotlib = "^3.4.1"
 h5py = "^3.3.0"
 alembic = "^1.6.5"
@@ -53,24 +52,13 @@ waitress = "^2.1.2"
 tinydb = "^4.5.2"
 munch = "^2.5.0"
 hupper = "^1.10.3"
-hiredis = "^2.0.0"
-redis = "^4.1.0"
-Jinja2 = "^3.0.3"
 psutil = "^5.9.0"
 pyzmq = ">=22.3,<24.0"
-msgpack = "^1.0.3"
-pika = "^1.2.0"
-psycopg2-binary = "^2.9.3"
 pytz = ">=2021.3,<2023.0"
-tzlocal = "^4.1"
-tenacity = "^8.0.1"
-asyncpg = "^0.25"
-celery = "^5.2.3"
 fastapi = ">=0.75,<0.78"
-requests = "^2.27.1"
-distro = "^1.7.0"
 filelock = "^3.7.1"
 qualang-tools = "^0.12.0"
+networkx = "^3.0"
 
 [tool.poetry.dev-dependencies]
 pytest = "^7.1.2"