Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update data types and examples #92

Merged
merged 1 commit into from
Aug 20, 2024
Merged

update data types and examples #92

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions .gitignore
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
# Ignore the virtual environment directory
.venv/
6 changes: 3 additions & 3 deletions catalog-v001.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@
<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<uri id="Imports Wizard Entry" name="https://w3id.org/emmo/1.0.0-beta7" uri="https://raw.githubusercontent.com/emmo-repo/EMMO/1.0.0-beta7/emmo.ttl"/>
<group id="Folder Repository, directory=, recursive=true, Auto-Update=false, version=2" prefer="public" xml:base="">
<uri name="https://w3id.org/emmo/domain/chemical-substance/0.7.0-beta/chemical-substance" uri="https://raw.githubusercontent.com/emmo-repo/domain-chemical-substance/main/chemical-substance.ttl"/>
<uri name="https://w3id.org/emmo/domain/chemical-substance/0.8.0-beta/chemical-substance" uri="https://raw.githubusercontent.com/emmo-repo/domain-chemical-substance/main/chemical-substance.ttl"/>
<uri name="https://w3id.org/emmo/domain/characterisation-methodology/chameo" uri="https://raw.githubusercontent.com/emmo-repo/domain-characterisation-methodology/main/chameo.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.20.0-beta/electrochemistry" uri="./electrochemistry.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.20.0-beta/electrochemicalquantities" uri="./electrochemicalquantities.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.21.0-beta/electrochemistry" uri="./electrochemistry.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.21.0-beta/electrochemicalquantities" uri="./electrochemicalquantities.ttl"/>

<uri name="https://w3id.org/emmo/1.0.0-beta7/mereocausality" uri="https://raw.githubusercontent.com/emmo-repo/EMMO/1.0.0-beta7/mereocausality/mereocausality.ttl"/>

Expand Down
78 changes: 70 additions & 8 deletions docs/assets/jsonld/electrochemical_method_constant_current_constant_voltage_cycling.jsonld
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,19 @@
}
]
},
"hasInput": [
{
"@type": "ElectrochemicalDevice"
},
{
"@type": "NumberOfIterations",
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 10
},
"hasMeasurementUnit": "emmo:UnitOne"
}
],
"hasOutput": [
{
"@type": "TimeSeriesDataSet",
Expand All @@ -39,14 +52,63 @@
"@type": "VoltageData"
},
{
"@type": "CurrentData"
"@type": "ElectricCurrentData"
}
]
}
],
"hasTemporaryParticipant": {
"@type": "ElectrochemicalWorkstation"
},
"hasSubProcess": [
{
"@type": ["VoltageMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
},
{
"@type": ["ElectricCurrentMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
},
{
"@type": ["TimeMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
},
{
"@type": ["TemperatureMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
}
],
"hasTask": {
"@type": "ConstantCurrentDischarging",
"hasMeasurementParameter": [
"hasInput": [
{
"@type": "DischargingCurrent",
"hasNumericalPart": {
Expand All @@ -56,7 +118,7 @@
"hasMeasurementUnit": "emmo:Ampere"
},
{
"@type": ["LowerVoltageLimit", "TerminationQuantity"],
"@type": ["LowerVoltageLimit"],
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 2.4
Expand All @@ -66,7 +128,7 @@
],
"hasNext": {
"@type": "ConstantCurrentCharging",
"hasMeasurementParameter": [
"hasInput": [
{
"@type": "ChargingCurrent",
"hasNumericalPart": {
Expand All @@ -76,7 +138,7 @@
"hasMeasurementUnit": "emmo:Ampere"
},
{
"@type": ["UpperVoltageLimit", "TerminationQuantity"],
"@type": ["UpperVoltageLimit"],
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 4.2
Expand All @@ -85,8 +147,8 @@
}
],
"hasNext": {
"@type": "ConstantVoltageCharging",
"hasMeasurementParameter": [
"@type": ["ConstantVoltageCharging", "EndTask"],
"hasInput": [
{
"@type": "ChargingVoltage",
"hasNumericalPart": {
Expand All @@ -96,7 +158,7 @@
"hasMeasurementUnit": "emmo:Volt"
},
{
"@type": ["UpperCurrentLimit", "TerminationQuantity"],
"@type": ["LowerCurrentLimit"],
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 10
Expand Down
3 changes: 1 addition & 2 deletions docs/assets/jsonld/fair_compliance_template.jsonld
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,7 @@
},
"http://schema.org/license": "http://opendefinition.org/licenses/cc-by/",
"dc:format": "application/ld+json",
"dc:accessRights": "public",
"dc:rights": "public",
"dc:accessRights": "open access",
"dc:publisher": {
"@type": "schema:ResearchOrganization",
"@id": "https://ror.org/01f677e56",
Expand Down
137 changes: 137 additions & 0 deletions docs/examples/example_zinc_foil.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,137 @@
{
"cells": [
{
"cell_type": "code",
"execution_count": 12,
"metadata": {},
"outputs": [],
"source": [
"# Import necessary libraries\n",
"from rdflib import Graph\n",
"from ontopy import get_ontology\n",
"import json\n",
"\n",
"# Load the ontology\n",
"echo = get_ontology('https://w3id.org/emmo/domain/electrochemistry/inferred').load()\n"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Diameter: 2 https://w3id.org/emmo#CentiMetre\n"
]
}
],
"source": [
"# Create an RDF graph\n",
"g = Graph()\n",
"\n",
"# Load the JSON-LD data\n",
"json_ld_data = {\n",
" \"@context\": \"https://w3id.org/emmo/domain/electrochemistry/context\",\n",
" \"@type\": \"Electrode\",\n",
" \"schema:manufacturer\": {\n",
" \"@type\": \"schema:ResearchOrganization\",\n",
" \"@id\": \"https://www.wikidata.org/wiki/Q3041255\",\n",
" \"schema:name\": \"SINTEF\"\n",
" },\n",
" \"schema:creator\": {\n",
" \"@type\": \"schema:Person\",\n",
" \"@id\": \"https://orcid.org/0000-0002-8758-6109\",\n",
" \"schema:name\": \"Simon Clark\"\n",
" },\n",
" \"hasActiveMaterial\": {\n",
" \"@type\": [\"Zinc\", \"Foil\"]\n",
" },\n",
" \"hasProperty\": [\n",
" {\n",
" \"@type\": [\"SpecificCapacity\", \"MeasuredProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 800\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:MilliAmpereHourPerGram\"\n",
" },\n",
" {\n",
" \"@type\": [\"Thickness\", \"ConventionalProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 250\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:MicroMetre\"\n",
" },\n",
" {\n",
" \"@type\": [\"Diameter\", \"MeasuredProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 2\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:CentiMetre\"\n",
" },\n",
" {\n",
" \"@type\": [\"Mass\", \"MeasuredProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 2.5\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:Gram\"\n",
" }\n",
" ]\n",
"}\n",
"\n",
"# Convert JSON-LD data to RDF and add to the graph\n",
"g.parse(data=json.dumps(json_ld_data), format='json-ld')\n",
"\n",
"# Query the graph to get the diameter\n",
"query = f\"\"\"\n",
"SELECT ?diameterValue ?measurementUnit\n",
"WHERE {{\n",
" ?electrode a <{echo.Electrode.iri}> ;\n",
" <{echo.hasProperty.iri}> ?property .\n",
"\n",
" ?property a <{echo.Diameter.iri}> ;\n",
" <{echo.hasNumericalPart.iri}> ?numericalPart ;\n",
" <{echo.hasMeasurementUnit.iri}> ?measurementUnit .\n",
"\n",
" ?numericalPart <{echo.hasNumericalValue.iri}> ?diameterValue .\n",
"}}\n",
"\"\"\"\n",
"\n",
"# Run the query\n",
"results = g.query(query)\n",
"\n",
"# Print results\n",
"for row in results:\n",
" unit = row.measurementUnit\n",
" print(f\"Diameter: {row.diameterValue} {row.measurementUnit}\")\n"
]
}
],
"metadata": {
"kernelspec": {
"display_name": ".venv",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.10"
}
},
"nbformat": 4,
"nbformat_minor": 2
}
1 change: 1 addition & 0 deletions docs/scripts/file
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{"_actions":{"delete":"https://kadi-dlr.hiu-batteries.de/api/records/5334/files/3282eaa3-d8f8-4f8e-8f3d-cb618c34ae80","edit_data":"https://kadi-dlr.hiu-batteries.de/api/records/5334/files/3282eaa3-d8f8-4f8e-8f3d-cb618c34ae80","edit_metadata":"https://kadi-dlr.hiu-batteries.de/api/records/5334/files/3282eaa3-d8f8-4f8e-8f3d-cb618c34ae80"},"_links":{"download":"https://kadi-dlr.hiu-batteries.de/api/records/5334/files/3282eaa3-d8f8-4f8e-8f3d-cb618c34ae80/download","record":"https://kadi-dlr.hiu-batteries.de/api/records/5334","self":"https://kadi-dlr.hiu-batteries.de/api/records/5334/files/3282eaa3-d8f8-4f8e-8f3d-cb618c34ae80"},"checksum":"a2be68921f0c0046e530d951590576d3","created_at":"2024-08-02T09:22:39.972837+00:00","description":"","id":"3282eaa3-d8f8-4f8e-8f3d-cb618c34ae80","last_modified":"2024-08-02T09:22:40.027077+00:00","magic_mimetype":"application/json","mimetype":"application/json","name":"18650-LG-3500-MJ1-Graphite.jsonld","size":226,"state":"active","storage":{"storage_name":"Local","storage_type":"local"}}
4 changes: 2 additions & 2 deletions electrochemicalquantities.ttl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
@base <https://w3id.org/emmo/domain/electrochemistry/electrochemicalquantities> .

<https://w3id.org/emmo/domain/electrochemistry/electrochemicalquantities> rdf:type owl:Ontology ;
owl:versionIRI <https://w3id.org/emmo/domain/electrochemistry/0.20.0-beta/electrochemicalquantities> ;
owl:versionIRI <https://w3id.org/emmo/domain/electrochemistry/0.21.0-beta/electrochemicalquantities> ;
owl:imports <https://w3id.org/emmo/1.0.0-beta7/disciplines/isq> ;
dcterms:abstract "This electrochemical quantities ontology is a domain of the Elementary Multiperspective Materials Ontology (EMMO). It is a specialized framework designed to represent and organize knowledge about electrochemical quantities. It is designed to integrate with the electrochemistry domain ontology or other ontologies from the EMMO ecosystem. The main focus of this ontology is to provide machine-readable descriptions of common electrochemical quantities, linking both to the larger descriptions of physical quantities in EMMO as well as other sources of information like the IEC, QUDT, Wikidata, etc. It should be used to support linked data generation in the electrochemistry domain."@en ;
dcterms:contributor <https://orcid.org/0000-0001-8869-3718> ,
Expand All @@ -21,7 +21,7 @@
dcterms:creator <https://orcid.org/0000-0002-8758-6109> ,
<https://orcid.org/0000-0003-2954-1233> ;
dcterms:license "https://creativecommons.org/licenses/by/4.0/legalcode" ;
owl:versionInfo "0.20.0-beta" .
owl:versionInfo "0.21.0-beta" .

#################################################################
# Annotation properties
Expand Down
Loading
Loading