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Merge pull request #92 from emmo-repo/dev
update data types and examples
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| # Ignore the virtual environment directory | ||
| .venv/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| { | ||
| "cells": [ | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 12, | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "# Import necessary libraries\n", | ||
| "from rdflib import Graph\n", | ||
| "from ontopy import get_ontology\n", | ||
| "import json\n", | ||
| "\n", | ||
| "# Load the ontology\n", | ||
| "echo = get_ontology('https://w3id.org/emmo/domain/electrochemistry/inferred').load()\n" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": 13, | ||
| "metadata": {}, | ||
| "outputs": [ | ||
| { | ||
| "name": "stdout", | ||
| "output_type": "stream", | ||
| "text": [ | ||
| "Diameter: 2 https://w3id.org/emmo#CentiMetre\n" | ||
| ] | ||
| } | ||
| ], | ||
| "source": [ | ||
| "# Create an RDF graph\n", | ||
| "g = Graph()\n", | ||
| "\n", | ||
| "# Load the JSON-LD data\n", | ||
| "json_ld_data = {\n", | ||
| " \"@context\": \"https://w3id.org/emmo/domain/electrochemistry/context\",\n", | ||
| " \"@type\": \"Electrode\",\n", | ||
| " \"schema:manufacturer\": {\n", | ||
| " \"@type\": \"schema:ResearchOrganization\",\n", | ||
| " \"@id\": \"https://www.wikidata.org/wiki/Q3041255\",\n", | ||
| " \"schema:name\": \"SINTEF\"\n", | ||
| " },\n", | ||
| " \"schema:creator\": {\n", | ||
| " \"@type\": \"schema:Person\",\n", | ||
| " \"@id\": \"https://orcid.org/0000-0002-8758-6109\",\n", | ||
| " \"schema:name\": \"Simon Clark\"\n", | ||
| " },\n", | ||
| " \"hasActiveMaterial\": {\n", | ||
| " \"@type\": [\"Zinc\", \"Foil\"]\n", | ||
| " },\n", | ||
| " \"hasProperty\": [\n", | ||
| " {\n", | ||
| " \"@type\": [\"SpecificCapacity\", \"MeasuredProperty\"],\n", | ||
| " \"hasNumericalPart\": {\n", | ||
| " \"@type\": \"Real\",\n", | ||
| " \"hasNumericalValue\": 800\n", | ||
| " },\n", | ||
| " \"hasMeasurementUnit\": \"emmo:MilliAmpereHourPerGram\"\n", | ||
| " },\n", | ||
| " {\n", | ||
| " \"@type\": [\"Thickness\", \"ConventionalProperty\"],\n", | ||
| " \"hasNumericalPart\": {\n", | ||
| " \"@type\": \"Real\",\n", | ||
| " \"hasNumericalValue\": 250\n", | ||
| " },\n", | ||
| " \"hasMeasurementUnit\": \"emmo:MicroMetre\"\n", | ||
| " },\n", | ||
| " {\n", | ||
| " \"@type\": [\"Diameter\", \"MeasuredProperty\"],\n", | ||
| " \"hasNumericalPart\": {\n", | ||
| " \"@type\": \"Real\",\n", | ||
| " \"hasNumericalValue\": 2\n", | ||
| " },\n", | ||
| " \"hasMeasurementUnit\": \"emmo:CentiMetre\"\n", | ||
| " },\n", | ||
| " {\n", | ||
| " \"@type\": [\"Mass\", \"MeasuredProperty\"],\n", | ||
| " \"hasNumericalPart\": {\n", | ||
| " \"@type\": \"Real\",\n", | ||
| " \"hasNumericalValue\": 2.5\n", | ||
| " },\n", | ||
| " \"hasMeasurementUnit\": \"emmo:Gram\"\n", | ||
| " }\n", | ||
| " ]\n", | ||
| "}\n", | ||
| "\n", | ||
| "# Convert JSON-LD data to RDF and add to the graph\n", | ||
| "g.parse(data=json.dumps(json_ld_data), format='json-ld')\n", | ||
| "\n", | ||
| "# Query the graph to get the diameter\n", | ||
| "query = f\"\"\"\n", | ||
| "SELECT ?diameterValue ?measurementUnit\n", | ||
| "WHERE {{\n", | ||
| " ?electrode a <{echo.Electrode.iri}> ;\n", | ||
| " <{echo.hasProperty.iri}> ?property .\n", | ||
| "\n", | ||
| " ?property a <{echo.Diameter.iri}> ;\n", | ||
| " <{echo.hasNumericalPart.iri}> ?numericalPart ;\n", | ||
| " <{echo.hasMeasurementUnit.iri}> ?measurementUnit .\n", | ||
| "\n", | ||
| " ?numericalPart <{echo.hasNumericalValue.iri}> ?diameterValue .\n", | ||
| "}}\n", | ||
| "\"\"\"\n", | ||
| "\n", | ||
| "# Run the query\n", | ||
| "results = g.query(query)\n", | ||
| "\n", | ||
| "# Print results\n", | ||
| "for row in results:\n", | ||
| " unit = row.measurementUnit\n", | ||
| " print(f\"Diameter: {row.diameterValue} {row.measurementUnit}\")\n" | ||
| ] | ||
| } | ||
| ], | ||
| "metadata": { | ||
| "kernelspec": { | ||
| "display_name": ".venv", | ||
| "language": "python", | ||
| "name": "python3" | ||
| }, | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.10.10" | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 2 | ||
| } | ||
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