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Minor formatting changes
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emmarousseau committed Jul 1, 2024
1 parent 474109e commit cebfead
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions src/umi_tools/umi_tools_dedup/config.vsh.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ argument_groups:
in the file names.
- name: --extract_umi_method
type: string
choices: ["read_id", "tag", "umis"]
choices: [read_id, tag, umis]
description: |
Specify the method by which the barcodes were encoded in the read.
The options are:
Expand All @@ -75,7 +75,7 @@ argument_groups:
type: string
description: |
The separator used to separate the UMI from the read sequence.
This is only required if the extract_umi_method is set to id_read. ['_']
This is only required if the extract_umi_method is set to id_read. [_]
example: '_'
- name: --umi_tag_split
type: string
Expand Down Expand Up @@ -103,7 +103,7 @@ argument_groups:
arguments:
- name: --method
type: string
choices: ["unique", "percentile", "cluster", "adjacency", "directional"]
choices: [unique, percentile, cluster, adjacency, directional]
description: |
The method to use for grouping reads.
The options are:
Expand Down Expand Up @@ -211,7 +211,7 @@ argument_groups:
example: "discard"
- name: --chimeric_pairs
type: string
choices: ["discard", "use", "output"]
choices: [discard, use, output]
description: |
How chimeric pairs should be handled.
The options are:
Expand All @@ -221,7 +221,7 @@ argument_groups:
example: "use"
- name: --unpaired_reads
type: string
choices: ["discard", "use", "output"]
choices: [discard, use, output]
description: |
How unpaired reads should be handled.
The options are:
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