Merge branch 'viash-hub:main' into main #149

Run time

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Job	Run time
test / run_ci_check_job	2s
test / list	44s
test / viash_test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)	3m 29s
test / viash_test (salmon_index, salmon, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)	1m 47s
test / viash_test (lofreq_indelqual, lofreq, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)	41s
test / viash_test (lofreq_call, lofreq, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)	48s
test / viash_test (busco_download_datasets, busco, src/busco/busco_download_datasets/config.vsh.yaml, sr...	2m 16s
test / viash_test (busco_list_datasets, busco, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/...	1m 22s
test / viash_test (busco_run, busco, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)	7m 30s
test / viash_test (bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)	2m 51s
test / viash_test (fastp, src/fastp/config.vsh.yaml, src/fastp/)	2m 14s
test / viash_test (cutadapt, src/cutadapt/config.vsh.yaml, src/cutadapt/)	1m 4s
test / viash_test (featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)	1m 47s
test / viash_test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)	2m 13s
test / viash_test (arriba, src/arriba/config.vsh.yaml, src/arriba/)	2m 48s
test / viash_test (gffread, src/gffread/config.vsh.yaml, src/gffread/)	1m 14s
test / viash_test (falco, src/falco/config.vsh.yaml, src/falco/)	1m 59s
test / viash_test (pear, src/pear/config.vsh.yaml, src/pear/)	1m 50s
test / viash_test (star_align_reads, star, src/star/star_align_reads/config.vsh.yaml, src/star/star_alig...	3m 55s
test / viash_test (star_genome_generate, star, src/star/star_genome_generate/config.vsh.yaml, src/star/s...	3m 32s
test / viash_test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samt...	40s
test / viash_test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/sam...	2m 9s
test / viash_test (samtools_faidx, samtools, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/s...	2m 21s
test / viash_test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/s...	1m 42s
test / viash_test (samtools_view, samtools, src/samtools/samtools_view/config.vsh.yaml, src/samtools/sam...	47s
test / viash_test (samtools_collate, samtools, src/samtools/samtools_collate/config.vsh.yaml, src/samtoo...	52s
test / viash_test (samtools_flagstat, samtools, src/samtools/samtools_flagstat/config.vsh.yaml, src/samt...	45s
test / viash_test (samtools_index, samtools, src/samtools/samtools_index/config.vsh.yaml, src/samtools/s...	41s
test / viash_test (samtools_fastq, samtools, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/s...	39s
test / viash_test (bedtools_getfasta, bedtools, src/bedtools/bedtools_getfasta/config.vsh.yaml, src/bedt...	39s
	55m 21s

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Merge branch 'viash-hub:main' into main #149

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Merge branch 'viash-hub:main' into main #149

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