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Merge branch 'main' into umi_tools_dedup #146

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Merge branch 'main' into umi_tools_dedup

Merge branch 'main' into umi_tools_dedup #146

Run time

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Job Run time
test / run_ci_check_job
2s
test / list
58s
test / viash_test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)
45s
test / viash_test (bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)
2m 23s
test / viash_test (cutadapt, src/cutadapt/config.vsh.yaml, src/cutadapt/)
1m 51s
test / viash_test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)
1m 26s
test / viash_test (gffread, src/gffread/config.vsh.yaml, src/gffread/)
1m 12s
test / viash_test (falco, src/falco/config.vsh.yaml, src/falco/)
1m 11s
test / viash_test (pear, src/pear/config.vsh.yaml, src/pear/)
37s
test / viash_test (star_align_reads, star, src/star/star_align_reads/config.vsh.yaml, src/star/star_alig...
5m 26s
test / viash_test (star_genome_generate, star, src/star/star_genome_generate/config.vsh.yaml, src/star/s...
3m 30s
test / viash_test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samt...
38s
test / viash_test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/sam...
50s
test / viash_test (samtools_faidx, samtools, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/s...
39s
test / viash_test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/s...
45s
test / viash_test (samtools_view, samtools, src/samtools/samtools_view/config.vsh.yaml, src/samtools/sam...
1m 58s
test / viash_test (samtools_collate, samtools, src/samtools/samtools_collate/config.vsh.yaml, src/samtoo...
47s
test / viash_test (samtools_fastq, samtools, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/s...
38s
test / viash_test (bedtools_getfasta, bedtools, src/bedtools/bedtools_getfasta/config.vsh.yaml, src/bedt...
44s
26m 20s