include arguments and script from the rnaseq.vsh version #131

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Job	Run time
run_ci_check_job	2s
list	40s
viash_test (/bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)	1m 45s
viash_test (/bgzip, src/bgzip/config.vsh.yaml, src/bgzip/)	1m 14s
viash_test (/falco, src/falco/config.vsh.yaml, src/falco/)	1m 12s
viash_test (star/star_align_reads, src/star/star_align_reads/config.vsh.yaml, src/star/star_align...	3m 54s
viash_test (/multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)	1m 18s
viash_test (/arriba, src/arriba/config.vsh.yaml, src/arriba/)	2m 35s
viash_test (lofreq/lofreq_call, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)	38s
viash_test (lofreq/lofreq_indelqual, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)	3m 3s
viash_test (/pear, src/pear/config.vsh.yaml, src/pear/)	49s
viash_test (samtools/samtools_index, src/samtools/samtools_index/config.vsh.yaml, src/samtools/sa...	1m 50s
viash_test (samtools/samtools_idxstats, src/samtools/samtools_idxstats/config.vsh.yaml, src/samto...	1m 31s
viash_test (samtools/samtools_stats, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/sa...	43s
viash_test (samtools/samtools_faidx, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/sa...	42s
viash_test (samtools/samtools_view, src/samtools/samtools_view/config.vsh.yaml, src/samtools/samt...	40s
viash_test (samtools/samtools_fastq, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/sa...	36s
viash_test (samtools/samtools_sort, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/samt...	1m 48s
viash_test (samtools/samtools_flagstat, src/samtools/samtools_flagstat/config.vsh.yaml, src/samto...	1m 53s
viash_test (samtools/samtools_collate, src/samtools/samtools_collate/config.vsh.yaml, src/samtool...	2m 20s
viash_test (busco/busco_run, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)	6m 32s
viash_test (busco/busco_list_datasets, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/b...	1m 19s
viash_test (busco/busco_download_datasets, src/busco/busco_download_datasets/config.vsh.yaml, src...	1m 18s
viash_test (salmon/salmon_quant, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)	46s
viash_test (salmon/salmon_index, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)	2m 0s
viash_test (/gffread, src/gffread/config.vsh.yaml, src/gffread/)	45s
viash_test (/fastp, src/fastp/config.vsh.yaml, src/fastp/)	43s
viash_test (/featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)	34s
viash_test (umi_tools/umi_tools_extract, src/umi_tools/umi_tools_extract/config.vsh.yaml, src/umi...	1m 6s
	44m 16s

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include arguments and script from the rnaseq.vsh version #131

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include arguments and script from the rnaseq.vsh version #131

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