script, preliminary version of tests #126

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Job	Run time
run_ci_check_job	1s
list	37s
viash_test (/bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)	1m 43s
viash_test (/bgzip, src/bgzip/config.vsh.yaml, src/bgzip/)	2m 17s
viash_test (/falco, src/falco/config.vsh.yaml, src/falco/)	1m 36s
viash_test (star/star_align_reads, src/star/star_align_reads/config.vsh.yaml, src/star/star_align...	4m 25s
viash_test (/multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)	1m 17s
viash_test (/arriba, src/arriba/config.vsh.yaml, src/arriba/)	5m 14s
viash_test (lofreq/lofreq_call, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)	1m 50s
viash_test (lofreq/lofreq_indelqual, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)	1m 42s
viash_test (/pear, src/pear/config.vsh.yaml, src/pear/)	36s
viash_test (samtools/samtools_index, src/samtools/samtools_index/config.vsh.yaml, src/samtools/sa...	1m 33s
viash_test (samtools/samtools_idxstats, src/samtools/samtools_idxstats/config.vsh.yaml, src/samto...	1m 33s
viash_test (samtools/samtools_stats, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/sa...	1m 0s
viash_test (samtools/samtools_faidx, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/sa...	40s
viash_test (samtools/samtools_view, src/samtools/samtools_view/config.vsh.yaml, src/samtools/samt...	44s
viash_test (samtools/samtools_fastq, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/sa...	50s
viash_test (samtools/samtools_sort, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/samt...	2m 16s
viash_test (samtools/samtools_flagstat, src/samtools/samtools_flagstat/config.vsh.yaml, src/samto...	40s
viash_test (samtools/samtools_collate, src/samtools/samtools_collate/config.vsh.yaml, src/samtool...	1m 42s
viash_test (busco/busco_run, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)	7m 37s
viash_test (busco/busco_list_datasets, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/b...	2m 37s
viash_test (busco/busco_download_datasets, src/busco/busco_download_datasets/config.vsh.yaml, src...	2m 25s
viash_test (salmon/salmon_quant, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)	52s
viash_test (salmon/salmon_index, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)	1m 2s
viash_test (/gffread, src/gffread/config.vsh.yaml, src/gffread/)	1m 47s
viash_test (/fastp, src/fastp/config.vsh.yaml, src/fastp/)	1m 7s
viash_test (/featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)	44s
viash_test (umi_tools/umi_tools_extract, src/umi_tools/umi_tools_extract/config.vsh.yaml, src/umi...	1m 3s
	51m 30s

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script, preliminary version of tests #126

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script, preliminary version of tests #126

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