Merge branch 'main' into samtools-index #52

Job	Run time
run_ci_check_job	3s
list	27s
viash_test (gffread/gffread, src/gffread/config.vsh.yaml, src/gffread/)	1m 27s
viash_test (/featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)	2m 20s
viash_test (salmon/salmon_quant, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)	2m 3s
viash_test (salmon/salmon_index, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)	1m 26s
viash_test (lofreq/lofreq_indelqual, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)	2m 23s
viash_test (lofreq/lofreq_call, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)	1m 50s
viash_test (/fastp, src/fastp/config.vsh.yaml, src/fastp/)	38s
viash_test (/pear, src/pear/config.vsh.yaml, src/pear/)	1m 41s
viash_test (/arriba, src/arriba/config.vsh.yaml, src/arriba/)	5m 43s
viash_test (samtools/samtools_flagstat, src/samtools/samtools_flagstat/config.vsh.yaml, src/samto...	2m 6s
viash_test (samtools/samtools_index, src/samtools/samtools_index/config.vsh.yaml, src/samtools/sa...	1m 27s
viash_test (busco/busco_list_datasets, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/b...	1m 18s
viash_test (busco/busco_run, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)	6m 27s
viash_test (busco/busco_download_datasets, src/busco/busco_download_datasets/config.vsh.yaml, src...	2m 56s
viash_test (star/star_align_reads, src/star/star_align_reads/config.vsh.yaml, src/star/star_align...	4m 5s
viash_test (/bgzip, src/bgzip/config.vsh.yaml, src/bgzip/)	34s
	38m 54s

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