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@elodiegermani1
elodiegermani1 committed Oct 12, 2023
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19 changes: 17 additions & 2 deletions cv.html
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Expand Up @@ -29,7 +29,6 @@ <h2 id="title" class="italic">PhD student</h2>
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Expand All @@ -39,6 +38,8 @@ <h2 id="title" class="italic">PhD student</h2>
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<a href="projects.html">PROJECTS</a>
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<a href="mediation.html">OUTREACH</a>
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<small>© Inria / Photo B. Fourrier</small>
Expand All @@ -53,6 +54,7 @@ <h2>Education</h2>
<div class="additional-text">
<p>&#9646 <b>Subject</b>: Mapping the fMRI pipeline space towards more robust pipelines</p>
<p>&#9646 Analytical variability in neuroimaging, medical image analysis, statistical learning, representative learning...</p>
<p>Supervised by <a href=http://camillemaumet.com/>Camille Maumet</a> & <a href="http://people.irisa.fr/Elisa.Fromont/">Elisa Fromont</a>.</p>
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Expand All @@ -74,15 +76,26 @@ <h2>Education</h2>
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<div id="experience">
<h2>Internships</h2>
<h2>Research experience</h2>
<ul>
<li>
<p><span class="strong">Improving rs-fMRI-derived biomarkers of Parkinson's Disease through analytical variability evaluations</span></p>
<p>Visiting student at Big Data Infrastructures for Neuroinformatics lab, Concordia University and the ORIGAMI lab, McGill University | Montreal (QC), Canada | Aug. 2023 - Nov. 2023</p>
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<p>&#9646 Reproduction and replication of a study using rs-fMRI and machine learning; </p>
<p>&#9646 Variations in the methodology and data; </p>
<p>&#9646 Assessment of the effect of these variations in the performance.</p>
<p>Supervised by <a href=https://www.mcgill.ca/neuro/jean-baptiste-poline-phd/>JB Poline</a> & <a href=https://users.encs.concordia.ca/~tglatard/>Tristan Glatard</a>.</p>
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<p><span class="strong">Evolution of analytical variability with sample size in fMRI data analyses</span></p>
<p>Empenn research unit, Univ Rennes, CNRS, Inria, Inserm, IRISA | Rennes, France | Jan. 2021 - Jul. 2021</p>
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<p>&#9646 Reproduction of existant fMRI data analyses pipelines; </p>
<p>&#9646 Use of comparison metrics to evaluate analytical variability; </p>
<p>&#9646 Impact of the number of subjects in this variability.</p>
<p>Supervised by <a href=http://camillemaumet.com/>Camille Maumet</a>.</p>
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Expand All @@ -91,13 +104,15 @@ <h2>Internships</h2>
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<p>&#9646 Tissue section microscopy images analysis with ImageJ; </p>
<p>&#9646 Development of an R/Shiny app that gives an interaction between an intensity scatterplot and the image.</p>
<p>Supervised by <a href=https://scholar.google.fr/citations?user=gzhZeOoAAAAJ&hl=fr>Hugues Lelouard</a> & <a href=https://www.linkedin.com/in/mathieu-fallet-48471323/?originalSubdomain=fr>Mathieu Fallet</a>.</p>
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<p><span class="strong">Discovery of Bioinformatics </span></p>
<p>MAP5 Laboratory, University Paris Descartes | Paris, France | Jun. 2019 </p>
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<p>&#9646 Initiation to statistical learning in Python applied to bioinformatics on biological data; </p>
<p>Supervised by <a href=https://scholar.google.com/citations?user=wZgVmyMAAAAJ&hl=en>Warith Harchaoui</a>.</p>
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4 changes: 2 additions & 2 deletions files/style.css
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3 changes: 2 additions & 1 deletion index.html
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Expand Up @@ -28,7 +28,6 @@ <h2 id="title" class="italic">PhD student</h2>
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<a href="index.html" class="active">HOME</a>
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Expand All @@ -38,6 +37,8 @@ <h2 id="title" class="italic">PhD student</h2>
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<a href="projects.html">PROJECTS</a>
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<a href="mediation.html">OUTREACH</a>
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<small>© Inria / Photo B. Fourrier</small>
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97 changes: 97 additions & 0 deletions mediation.html
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<!DOCTYPE html>
<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<title>Ongoing projects</title>
<link rel="icon" href="img/index.jpg">
<link rel="stylesheet" href="files/style.css">
<link rel="shortcut icon" type="image/png" href="img/favicon.png"/>
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<body>
<div id="navigation">
<div id="profile">
<a><img src="img/elodiegermani.png"></a>
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<div id="contact">
<h1>
Elodie <span class="upper">GERMANI</span>
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<h2 id="title" class="italic">PhD student</h2>
<p>[email protected]</p>
<p>Rennes, France</p>
<p class="link">
<a href="https://github.com/elodiegermani1"><img id="github" src="img/github.png" class="external"></a>
<a href="https://gitlab.inria.fr/egermani"><img id="gitlab" src="img/gitlab.png" class="external"></a>
<a href="https://www.linkedin.com/in/elodie-germani-b861021a2/"><img id="linkedin" src="img/linkedin.png" class="external"></a>
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<div class="vertical-menu">
<a href="index.html">HOME</a>
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<a href="cv.html">CV</a>
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<a href="publications.html">PUBLICATIONS</a>
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<a href="projects.html">PROJECTS</a>
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<a href="mediation.html" class="active">OUTREACH</a>
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<small>© Inria / Photo B. Fourrier</small>
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<div id="content">
<div id="projects">
<h2>Scientific mediation</h2>
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<li>
<p><b>L Codent, L Créent 👧</b>
<p>
The goal of this action is to promote computer science to young girls in middle-school (13-15 yo) through workshops of creative programming. Organisation of educational sessions in middle-schools (8 of 45min) and a final exhibition to expose the artworks. </p>
<p> <i> Action presented during <a href="https://www.femmesetsciences.fr/colloques">the Femmes&Sciences colloquium in 2022</a>.</i> </p>
<p>
<a href="https://inria.hal.science/hal-04239885">[Slides]</a> <a href="https://semdyal.trinket.io/lclc#/introduction/les-images-et-processing">[Trinket]</a>
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<p> <i> <a href="http://lclc-rennes.irisa.fr/">More information</a>.</i> </p>
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<p><b>TISSAGE project 🧶</b>
<p>
The TISSAGE project aims to bring together citizens, researchers and decision-makers to meet, know and understand each other to form a society and act together. This involves involving all stakeholders in all stages of science production in order to implement real participatory research.
Preparation of a mediation for a restitution day: Quizz about Artificial intelligence and human intelligence.</p>
<p> <i> <a href="https://www.univ-rennes.fr/saps-tissage">More information</a>.</i> </p>
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<p><b>"Computing without computer" 🧩</b>
<p>
Animation of sessions of "Computing without computer" to promote computer science to general public and scholars. Sessions at "J'peux pas j'ai informatique" day for teachers in middle school and at College Pierre-Olivier Malherbe, Chateaubourg for 9th grade students (3ème).</p>
<p> <i> <a href="https://www.societe-informatique-de-france.fr/mediation/infosansordi/">More information</a>.</i> </p>
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<p><b>Semaine du cerveau (Brain week) 🧠</b>
<p>
Organization and preparation of a quizz about neuroimaging research (the jobs, image treatment, neuroimaging methods, findings about the brain, etc.). Presentation during the Semaine du cerveau 2022 at CHU Pontchaillou, Rennes.</p>
<p> <i> <a href="https://www.semaineducerveau.fr/">More information</a>.</i> </p>
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<p><b>Big Day 2020 🧬</b>
<p>
Organization of the Big Day 2020 with the Master of Bioinformatics and Genomics of Rennes: day of conference about bioinformatics and data science. Leader of the communication team.</p>
<p> <i> <a href="https://ebigo-rennes.jimdofree.com/2020/12/20/bigday-2020-bilan-et-rediffusion/">More information</a>.</i> </p>
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5 changes: 3 additions & 2 deletions projects.html
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Expand Up @@ -27,7 +27,6 @@ <h2 id="title" class="italic">PhD student</h2>
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Expand All @@ -37,6 +36,8 @@ <h2 id="title" class="italic">PhD student</h2>
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<a href="projects.html" class="active">PROJECTS</a>
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<a href="mediation.html">OUTREACH</a>
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<small>© Inria / Photo B. Fourrier</small>
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Expand All @@ -48,7 +49,7 @@ <h2>Projects</h2>
<p><b>NARPS Open Pipelines Project</b>
<p>
The goal of the NARPS open pipeline project is to create a codebase reproducing the 70 pipelines of the NARPS project (Botvinik-Nezer et al., 2020) and share this as an open resource for the community. </p>
<p> <i> Project presented at <a href="https://ohbm.github.io/hackathon2022/">OHBM BrainHack 2022</a>.</i> </p>
<p> <i> Project presented at <a href="https://ohbm.github.io/hackathon2022/">OHBM BrainHack 2022</a> and <a href="https://ohbm.github.io/hackathon2023/"> OHBM BrainHack 2023</a>.</i> </p>
<p>
<a href="https://github.com/Inria-Empenn/narps_open_pipelines"> <img id="github" src="img/github.png" class="external" width="20" height="20"> GitHub repository</a>
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18 changes: 16 additions & 2 deletions publications.html
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<a href="https://www.linkedin.com/in/elodie-germani-b861021a2/"><img id="linkedin" src="img/linkedin.png" class="external"></a>
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<small>© Inria / Photo B. Fourrier</small>
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Expand All @@ -38,7 +36,10 @@ <h2 id="title" class="italic">PhD student</h2>
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<a href="projects.html">PROJECTS</a>
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<a href="mediation.html">OUTREACH</a>
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<small>© Inria / Photo B. Fourrier</small>
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Expand All @@ -65,6 +66,19 @@ <h2>Publications</h2>
<div id="poster">
<h2>Conference talks and posters</h2>
<ul>
<li>
<p><span class="strong">2023</span></p>
<p><b>Elodie Germani</b>, Elisa Fromont, Camille Maumet<br>
"Exploring variability patterns in the task-fMRI analytical space" <i>OHBM 2023 - 29th Annual Meeting of the Organization for Human Brain Mapping</i>, Jul 2023, Montreal, Canada.
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<a href="https://inria.hal.science/hal-03991042">[PDF]</a>
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<p><b>Elodie Germani</b>, Elisa Fromont, Camille Maumet<br>
"Representation learning for more reproducible fMRI data analyses" <i>IABM 2023 - Colloque Français d'Intelligence Artificielle en Imagerie Biomédical</i>, Mar 2023, Paris, France. pp.1.
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<a href="https://inria.hal.science/hal-04068797">[PDF]</a>
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<p><span class="strong">2022</span></p>
<p><b>Elodie Germani</b>, Camille Maumet<br>
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