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Kjell Petersen edited this page Jan 18, 2024
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(Formerly a more deployment docs focussed wiki only, that content is still here :))
This wiki is meant to be the central hub for the team, to find pointers for resources and documentation from here. That does not mean that all docs should be wiki pages, they will created by many sources in different systems, but the FEGA Norway team should make this "the go-to place" to find an overview and how to dig more into details, either here or in other locations.
- Architecture overview
- List of useful presentations
- FEGA Norway production website: https://ega.elixir.no
- FEGA Norway test stack website: https://tryggve.tsd.usit.uio.no
- Installation/access details prod vs test vs dev vs github
- Federated EGA governance structure
- An overview description of what is needed to deploy from scratch
- Index page for different deployment parts
- FEGA Onboarding website: https://ega-archive.github.io/FEGA-onboarding/
- TSD file API: https://data.tsd.usit.no/api/tsd-api-integration.html
- CRG’s documentation page: https://localega.readthedocs.io/en/latest/
- NeIC documentation page: https://neic-sda.readthedocs.io/en/latest/
- Crypt4GH specification: http://samtools.github.io/hts-specs/crypt4gh.pdf
- Video on Norwegian microservices: https://vimeo.com/487279078
- https://github.com/elixir-oslo/crypt4gh (GO version, admins: Ahmed, Kjell, Stefan, Johan)
- https://github.com/elixir-oslo/lega-commander (GO version, admin: Kjell, write: Arash, Joshua, Kjetil, Parisa Maintain: Ahmed. )
- https://github.com/elixir-oslo/clearinghouse (Java, admins [Ahemd, Kjell], maintainers [Stefan, Johan], write: Joshua, Kjetil, Parisa)
- https://github.com/elixir-oslo/lega-utils contains utils.py script used in Manual Data-Out, most recent version is inside p969, latest changes must be updated to github.
- https://github.com/uio-bmi/crypt4gh (Java, Kjell maintainer)
- https://github.com/uio-bmi/TSD-File-API-client (Java, localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/TSD-File-API-stub (Java , localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/LocalEGA-TSD-proxy (Java , localega team admin [Kjell, Ahmed, Fabian, Milen], write access Arash)
- https://github.com/uio-bmi/NFEGA-webpages (Mostly wiki , localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/mq-interceptor (GO, localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/uio-bmi/localega-broker (RMQ config/Shell , localega team maintainer [Kjell, Ahmed, Fabian, Milen])
- https://github.com/neicnordic/LocalEGA-deploy-swarm/ (Java, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian] )
- https://github.com/uio-bmi/LocalEGA-deploy-swarm-fork (further develop repo above to deploy on devs own laptops)
- https://github.com/neicnordic/sda-pipeline (GO, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian])
- https://github.com/neicnordic/sda-doa ( Java, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian] )
- https://github.com/neicnordic/sda-db (postgres/entrypoint.sh/configs, sda-dev-collab team admin [Kjell, Arash, Ahmed, Fabian])