Update human_pathogen_genomics.md

Removing "tool" syntax for projects and organisations.

pages/your_domain/human_pathogen_genomics.md

@@ -111,7 +111,7 @@ While the objects of interest in this domain are pathogens, the data is usually
 #### Generating genomic data
 * Establish protocols and document the steps taken in the lab to process the sample and in the computational workflow to prepare the resulting data. Make sure to keep information from quality assurance procedures and strive to make your labwork and computational process as reproducible as possible.
     * [High-Throughput Sequencing \| LifeScienceRDMLookUp](https://elixir.no/rdm-lookup/sequencing)
-    * {% tool"beyond-1-million-genomes" %} project provides guidelines that cover the minimum [quality requirements](https://zenodo.org/record/5018495) for the generation of genome sequencing data.
+    * The [Beyond 1 Million genomes project](https://b1mg-project.eu/) provides guidelines that cover the minimum [quality requirements](https://zenodo.org/record/5018495) for the generation of genome sequencing data.
     * Data repositories generally have information about recommended [data file formats](data_publication) and [metadata](metadata_management)
     * The {% tool "fair-cookbook" %} provides instructions on [validation of file formats](https://faircookbook.elixir-europe.org/content/recipes/interoperability/fastq-file-format-validators.html)
     * A good place to look for scientific and technical information about data quality validation software tools for pathogenomics is {% tool "bio-tools" %}.
@@ -133,7 +133,7 @@ While the objects of interest in this domain are pathogens, the data is usually
 #### Sharing host-related and other contextual information
 * Some host-related information can be personal and/or sensitive and care should be taken when storing and sharing it. Apply data masking and aggregation techniques to pseudonymise or anonymise the contextual information and take measures to separate personal and sensitive information from the pathogen data when possible.
 * Adopt solutions for federated analysis to support distributed analyses on information that could otherwise not be shared, such as establishing contractual agreements with suitable regional or international data infrastructures.
-* {% tool "ga4gh" %} is a global organisation that frames policy and builds standards to meet the real-world needs of the genomics and health community. Its [GDPR & International Health Data Sharing Forum](https://www.ga4gh.org/product/gdpr-international-health-data-sharing-forum/) shares *GDPR Briefs* that represent a consensus position among its Forum Members (not legal advice) regarding the current understanding of the GDPR and its implications for genomic and health-related research, such as 
+* [GA4GH](https://www.ga4gh.org/) is a global organisation that frames policy and builds standards to meet the real-world needs of the genomics and health community. Its [GDPR & International Health Data Sharing Forum](https://www.ga4gh.org/product/gdpr-international-health-data-sharing-forum/) shares *GDPR Briefs* that represent a consensus position among its Forum Members (not legal advice) regarding the current understanding of the GDPR and its implications for genomic and health-related research, such as 
   * [GDPR Brief: data protection implications of publishing metadata to enable discovery](https://www.ga4gh.org/news_item/ga4gh-gdpr-brief-data-protection-implications-of-publishing-metadata-to-enable-discovery/)
   * [GDPR Brief: federated analysis for responsible data sharing under the GDPR](https://www.ga4gh.org/news_item/ga4gh-gdpr-brief-federated-analysis-for-responsible-data-sharing-under-the-gdpr/)