Adding bibliography for the human pathogen genomics domain page #3747
Workflow file for this run
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| name: Jekyll site CI | |
| on: | |
| push: | |
| pull_request: | |
| branches: [ master, main ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.inputs.branch }} | |
| - name: Setup Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: '3.1' | |
| bundler-cache: true | |
| cache-version: 0 | |
| - name: Setup Pages | |
| id: pages | |
| uses: actions/configure-pages@v2 | |
| - name: Set Jekyll environment | |
| id: name | |
| run: | | |
| if [ "$REPO_OWNER" == "elixir-europe" ]; then | |
| echo "jekyll_env=production" >> $GITHUB_OUTPUT | |
| else | |
| echo "jekyll_env=development" >> $GITHUB_OUTPUT | |
| fi | |
| env: | |
| REPO_OWNER: ${{ github.repository_owner }} | |
| - name: Install dependencies | |
| run: | | |
| bundle install | |
| - name: Build with Jekyll | |
| # Outputs to the './_site' directory by default | |
| run: | | |
| bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}" | |
| env: | |
| PAGES_REPO_NWO: ${{ github.repository }} | |
| JEKYLL_BUILD_BRANCH: ${{ github.ref_name }} | |
| JEKYLL_ENV: ${{ steps.name.outputs.jekyll_env }} | |
| JEKYLL_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| JEKYLL_BASE_PATH: ${{ steps.pages.outputs.base_path }} | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v1 | |
| deploy: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| if: | | |
| github.event_name == 'workflow_dispatch' || | |
| (github.event_name == 'push' && github.event.repository.default_branch == github.ref_name) | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: true | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v1 | |