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Crypt4GH Middleware Checks

ci: add task tests #102

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ci: add task tests

ci: add task tests #102

Workflow file for this run

.github/workflows/checks.yaml at f109bfd
name: Crypt4GH Middleware Checks
on:
pull_request:
branches: [main]
jobs:
lint:
name: Run linting
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install poetry
run: pip install poetry
- name: Install dependencies
run: poetry install
- name: Lint with pylint
run: poetry run pylint tests/* crypt4gh_middleware/*
- name: Lint with ruff
run: poetry run ruff check tests/* crypt4gh_middleware/*
- name: Type checking with mypy
run: poetry run mypy crypt4gh_middleware
test:
name: Run tests
runs-on: ubuntu-latest
services:
funnel:
image: athitheyag/funnel:test
ports:
- 8000:8000
minio:
image: minio/minio:edge-cicd
ports:
- 9000:9000
env:
MINIO_ROOT_USER: minioadmin
MINIO_ROOT_PASSWORD: minioadmin
steps:
- name: Fetch mc client
run: curl -o ./mc -# https://dl.min.io/client/mc/release/linux-amd64/mc && chmod +x ./mc
- name: Create input and output buckets
run: |
./mc alias set minio http://localhost:9000 minioadmin minioadmin \
&& ./mc mb minio/inputs \
&& ./mc mb minio/outputs
- name: Set bucket permissions to public
run: |
./mc anonymous set public minio/inputs \
&& ./mc anonymous set public minio/outputs
- name: Checkout repository
uses: actions/checkout@v4
- name: Upload input files
run: |
for file in inputs/*; do
curl http://localhost:9000/inputs/$(basename $file) --upload-file $file
done
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install poetry
run: pip install poetry
- name: Install dependencies
run: poetry install
- name: Run tests
run: poetry run pytest tests/tasks