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Add support for snakemake 8.x #15

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Add support for snakemake 8.x #15

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veprbl
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@veprbl veprbl commented Mar 27, 2024

The file formats are not backwards compatible, so we need to provide a new entry point. Common parts are refactored while we support both 7.x and 8.x. Interactive users are to do --snakefile Snakefile.8, but for gitlab steering there is no clear way to set this globally, so we move the file over instead.

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veprbl commented Apr 1, 2024

I'm tempted to just abandon Snakamake's remote file download and make our own rules with minio/xrdcp, or even direct streaming.

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veprbl commented Jul 3, 2024

I'm tempted to just abandon Snakamake's remote file download and make our own rules with minio/xrdcp, or even direct streaming.

And that's what we are going to do.

@veprbl veprbl closed this Jul 3, 2024
@veprbl veprbl deleted the pr/snakemake_8 branch July 3, 2024 22:23
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