.gitlab-ci.yml: add snakemake sim_output path support

eic · Dec 31, 2023 · 98eb762 · 98eb762
1 parent 1ef4d2e
commit 98eb762
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -117,6 +117,9 @@ get_data:
     - ls -lrtha 
     - ln -s "${LOCAL_DATA_PATH}/sim_output" sim_output
     - ln -s "${LOCAL_DATA_PATH}/datasets/data" data
+    # snakemake support
+    - mkdir "${DETECTOR_CONFIG}"
+    - ln -s "${LOCAL_DATA_PATH}/sim_output" "${DETECTOR_CONFIG}/sim_output"
     - ls -lrtha
   retry:
     max: 2