Split up default target rule into 3 rules so that proper dependency i…

…s obeyed. Execute snakemake all1/2/3 in sequence to avoid errors
eic · Jan 25, 2024 · 805c2cd · 805c2cd
1 parent d81ab52
commit 805c2cd
Showing 1 changed file with 11 additions and 7 deletions.
diff --git a/benchmarks/roman_pots/Snakefile b/benchmarks/roman_pots/Snakefile
@@ -45,17 +45,23 @@ MODEL_VERSION = [
 ]
 INPUT_STEERING_FILE = "steering_file.py"
 
-rule all:
+rule all1:
   input:
     expand("results/"+str(DETECTOR_VERSION)+"/{detector_config}/detector_benchmarks/"+str(SUBSYSTEM)+"/"+str(BENCHMARK)+"/raw_data/"+str(DETECTOR_VERSION)+"_{detector_config}_{index}.edm4hep.root",
            detector_config=DETECTOR_CONFIG,
            index=NFILES),
-    expand("results/"+str(DETECTOR_VERSION)+"/{detector_config}/detector_benchmarks/"+str(SUBSYSTEM)+"/"+str(BENCHMARK)+"/processed_data/"+str(DETECTOR_VERSION)+"_{detector_config}_{index}.txt",
-           detector_config=DETECTOR_CONFIG,
-           index=NFILES),
     expand("results/"+str(DETECTOR_VERSION)+"/{detector_config}/detector_benchmarks/"+str(SUBSYSTEM)+"/"+str(BENCHMARK)+"/metadata/"+str(DETECTOR_VERSION)+"_{detector_config}_"+str(SUBSYSTEM)+"_"+str(BENCHMARK)+"_{model_version}.txt",
            detector_config=DETECTOR_CONFIG,
-           model_version=MODEL_VERSION),
+           model_version=MODEL_VERSION)
+
+rule all2:
+  input:
+    expand("results/"+str(DETECTOR_VERSION)+"/{detector_config}/detector_benchmarks/"+str(SUBSYSTEM)+"/"+str(BENCHMARK)+"/processed_data/"+str(DETECTOR_VERSION)+"_{detector_config}_{index}.txt",
+           detector_config=DETECTOR_CONFIG,
+           index=NFILES)
+
+rule all3:
+  input:
     expand("results/"+str(DETECTOR_VERSION)+"/{detector_config}/detector_benchmarks/"+str(SUBSYSTEM)+"/"+str(BENCHMARK)+"/trained_models/model_pz_"+str(DETECTOR_VERSION)+"_{detector_config}_"+str(SUBSYSTEM)+"_"+str(BENCHMARK)+"_{model_version}.pt",
            detector_config=DETECTOR_CONFIG,
            model_version=MODEL_VERSION),
@@ -75,8 +81,6 @@ rule all:
            detector_config=DETECTOR_CONFIG,
            model_version=MODEL_VERSION)
 
-
-
 rule roman_pots_generate_events:
   input:
   output: