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@eead-csic-compbio eead-csic-compbio released this 04 May 17:06
· 510 commits to master since this release
v2.0.15
865f311

This is release 05052016 (v2.0.15) of GET_HOMOLOGUES, which ships with a few fixes, the last two important ones:

  • added check so that initial core/pan size cannot be < 0 (get_homologues-est.pl)
  • added option -c to plot_matrix_heatmap.sh to filter out excessive redundancy by imposing a max identity cut-off value
  • set $MIN_PERSEQID_HOM_EST=70 and $MIN_COVERAGE_HOM_EST=50 in lib/marfil_homology.pm
  • added new figures to manual_get_homologues-est.pdf
  • fixed bug in get_homologues-est.pl -c so that redundant isoforms are not added to pan/core sets
  • fixed bug in get_homologues.pl -c so that inparalogues are substracted while adding up novel BDBH pan-genome genes
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