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1. HelloWorld HelloWorld Public

   following tutorial to learn github

2. SPEctRA SPEctRA Public

   Forked from shenlab-sinai/SPEctRA

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3. pipelines_for_ChIP-seq_analysis pipelines_for_ChIP-seq_analysis Public

   Forked from shenlab-sinai/pipelines_for_ChIP-seq_analysis

   Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.

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4. chip-seq_preprocess chip-seq_preprocess Public

   Forked from shenlab-sinai/chip-seq_preprocess

   A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.

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5. diffreps diffreps Public

   Forked from shenlab-sinai/diffreps

   Differential analysis for ChIP-seq with biological replicates

   Perl