upgraded to pandas 2.1 #187
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| --- | |
| name: "Conda + pip" | |
| # Use login shell everywhere | |
| # https://github.com/mamba-org/setup-micromamba/tree/fcc371cea11af9012e5e916ab2dab44b42acdaaa#about-login-shells | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| - "master" | |
| - "dev" | |
| paths: | |
| - "**.py" | |
| - ".github/workflows/*.yml" | |
| - "pyproject.toml" | |
| - "poetry.lock" | |
| - "locks/*" | |
| pull_request: | |
| paths: | |
| - "**.py" | |
| - ".github/workflows/*.yml" | |
| - "pyproject.toml" | |
| - "poetry.lock" | |
| - "locks/*" | |
| jobs: | |
| run-linters: | |
| name: "Run linters" | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - name: "Check out Git repository" | |
| uses: "actions/checkout@v3" | |
| - name: "Set up Python" | |
| uses: "actions/setup-python@v3" | |
| with: | |
| python-version: "3.10" | |
| - name: "Install Python dependencies" | |
| run: "pip install 'black<24'" | |
| - name: "Run linters" | |
| run: "black --check ./" | |
| run-tests: | |
| needs: "run-linters" | |
| name: "Test Python ${{ matrix.python }} on ${{ matrix.os }} using ${{ matrix.mpi }}" | |
| runs-on: "${{ matrix.os }}" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # os: [ "ubuntu-latest", "macos-latest" ] | |
| # mpi: [ "mpich", "openmpi" ] | |
| os: [ "ubuntu-latest"] | |
| mpi: [ "openmpi" ] | |
| python: [ "3.9", "3.10", "3.11" ] | |
| env: | |
| SCHISM_ENV: "SCHISM_ENV" | |
| DELFT3D_ENV: "DELFT3D_ENV" | |
| PYPOSEIDON_ENV: "PYPOSEIDON_ENV" | |
| # | |
| SCHISM_LOCK: locks/conda-${{ matrix.os }}-schism_${{ matrix.mpi }}.lock | |
| DELFT3D_LOCK: locks/conda-${{ matrix.os }}-delft3d_${{ matrix.mpi }}.lock | |
| PYPOSEIDON_LOCK: locks/conda-${{ matrix.os }}-binary-p${{ matrix.python }}.lock | |
| REQUIREMENTS_CI: locks/requirements-ci.txt | |
| REQUIREMENTS_VIZ: locks/requirements-viz.txt | |
| defaults: | |
| run: | |
| shell: "bash -elo pipefail {0}" | |
| steps: | |
| - run: "env | sort" | |
| - uses: "actions/checkout@v3" | |
| - name: "Install micromamba" | |
| run: | | |
| mkdir -p ~/.local/bin/ | |
| curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj -C ~/.local/bin/ --strip-components=1 bin/micromamba | |
| echo export MAMBA_EXE=$(which micromamba) | tee -a ~/.bashrc | |
| echo export MAMBA_ROOT_PREFIX=~/micromamba | tee -a ~/.bashrc | |
| - run: which micromamba | |
| - name: "Create ~/.condarc" | |
| run: | | |
| rm -rf ~/.condarc | |
| cat << EOF > ~/.condarc | |
| --- | |
| auto_activate_base: false | |
| auto_stack: false | |
| channel_priority: strict | |
| channels: | |
| - gbrey | |
| - conda-forge | |
| EOF | |
| - run: cat ~/.condarc | |
| - name: "Cache ${{ env.SCHISM_ENV }}" | |
| uses: actions/cache@v3 | |
| id: cache-SCHISM_ENV | |
| with: | |
| path: ~/micromamba/envs/${{ env.SCHISM_ENV }} | |
| key: ${{ matrix.os }}-${{ matrix.mpi }}-${{ env.SCHISM_ENV }}-${{ hashFiles( env.SCHISM_LOCK )}} | |
| restore-keys: | | |
| ${{ matrix.os }}-${{ matrix.mpi }}-${{ env.SCHISM_ENV }}- | |
| - name: "Cache ${{ env.DELFT3D_ENV }}" | |
| uses: actions/cache@v3 | |
| id: cache-DELFT3D_ENV | |
| with: | |
| path: ~/micromamba/envs/${{ env.DELFT3D_ENV }} | |
| key: ${{ matrix.os }}-${{ matrix.mpi }}-${{ env.DELFT3D_ENV }}-${{ hashFiles( env.DELFT3D_LOCK )}} | |
| restore-keys: | | |
| ${{ matrix.os }}-${{ matrix.mpi }}-${{ env.DELFT3D_ENV }}- | |
| - name: "Cache ${{ env.PYPOSEIDON_ENV }}" | |
| uses: actions/cache@v3 | |
| id: cache-PYPOSEIDON_ENV | |
| with: | |
| path: ~/micromamba/envs/${{ env.PYPOSEIDON_ENV }} | |
| key: ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-${{ hashFiles( env.PYPOSEIDON_LOCK )}}-${{ hashFiles( env.REQUIREMENTS_CI )}} | |
| restore-keys: | | |
| ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-${{ hashFiles( env.PYPOSEIDON_LOCK )}} | |
| ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}- | |
| - name: Cache tests/data/ | |
| uses: actions/cache@v3 | |
| env: | |
| # Increase this value to reset cache if files in tests/data have been added/removed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: /home/runner/work/pyPoseidon/pyPoseidon/tests/data | |
| key: tests_data-${{ env.CACHE_NUMBER }} | |
| - name: "Create ${{ env.SCHISM_ENV }}" | |
| if: steps.cache-SCHISM_ENV.outputs.cache-hit != 'true' | |
| run: micromamba create --yes --name ${SCHISM_ENV} -f ${SCHISM_LOCK} | |
| - name: "Create ${{ env.DELFT3D_ENV }}" | |
| if: steps.cache-DELFT3D_ENV.outputs.cache-hit != 'true' | |
| run: micromamba create --yes --name ${DELFT3D_ENV} -f ${DELFT3D_LOCK} | |
| - name: "Create ${{ env.PYPOSEIDON_ENV }}" | |
| if: steps.cache-PYPOSEIDON_ENV.outputs.cache-hit != 'true' | |
| run: micromamba create --yes --name ${PYPOSEIDON_ENV} -f ${PYPOSEIDON_LOCK} | |
| - name: "Install python dependencies" | |
| run: | | |
| eval "$(micromamba shell hook)" | |
| micromamba activate --stack "${PYPOSEIDON_ENV}" | |
| python -mpip install -U pip | |
| python -mpip install -r "${REQUIREMENTS_CI}" | |
| python -mpip install ./ | |
| - name: "Run tests: Basic" | |
| run: | | |
| eval "$(micromamba shell hook)" | |
| micromamba activate "${SCHISM_ENV}" | |
| micromamba activate --stack "${DELFT3D_ENV}" | |
| micromamba activate --stack "${PYPOSEIDON_ENV}" | |
| make test | |
| # - name: "Run tests: Viz" | |
| # if: matrix.python != '3.11' | |
| # run: | | |
| # eval "$(micromamba shell hook)" | |
| # micromamba activate "${PYPOSEIDON_ENV}" | |
| # python -mpip install -r "${REQUIREMENTS_VIZ}" | |
| # make test_viz | |
| - name: "Run tests: Schism" | |
| run: | | |
| eval "$(micromamba shell hook)" | |
| micromamba activate "${SCHISM_ENV}" | |
| # micromamba activate --stack "${DELFT3D_ENV}" | |
| micromamba activate --stack "${PYPOSEIDON_ENV}" | |
| make test_schism | |
| - name: "Run tests: Delft" | |
| run: | | |
| eval "$(micromamba shell hook)" | |
| # micromamba activate "${SCHISM_ENV}" | |
| micromamba activate --stack "${DELFT3D_ENV}" | |
| micromamba activate --stack "${PYPOSEIDON_ENV}" | |
| make test_delft |