Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add easyconfig BLAST+-2.14.1-gompi-2023b.eb #21822

Open
wants to merge 11 commits into
base: develop
Choose a base branch
from

Conversation

julianmorillo
Copy link
Contributor

No description provided.

Copy link

github-actions bot commented Nov 11, 2024

Updated software BLAST+-2.14.1-gompi-2023b.eb

Diff against BLAST+-2.14.1-gompi-2023a.eb

easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb

diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023b.eb
index 844a985482..f3626130d0 100644
--- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023a.eb
+++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023b.eb
@@ -20,7 +20,7 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm
  for comparing primary biological sequence information, such as the amino-acid
  sequences of different proteins or the nucleotides of DNA sequences."""
 
-toolchain = {'name': 'gompi', 'version': '2023a'}
+toolchain = {'name': 'gompi', 'version': '2023b'}
 toolchainopts = {'usempi': True, 'pic': True}
 
 source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/%(namelower)s/%(version)s/']
@@ -33,16 +33,17 @@ dependencies = [
     ('zlib', '1.2.13'),
     ('bzip2', '1.0.8'),
     ('PCRE', '8.45'),
-    ('Boost', '1.82.0'),
-    ('GMP', '6.2.1'),
-    ('libpng', '1.6.39'),
-    ('libjpeg-turbo', '2.1.5.1'),
+    ('Boost', '1.83.0'),
+    ('GMP', '6.3.0'),
+    ('libpng', '1.6.40'),
+    ('libjpeg-turbo', '3.0.1'),
     ('LMDB', '0.9.31'),
 ]
 
 # remove line that prepends system paths to $PATH from configure script
 preconfigopts = r'sed -i "s|^PATH=\(.*\)$|#PATH=\1 |" %(start_dir)s/src/build-system/configure && '
 
+
 configopts = "--with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 "
 configopts += "--with-pcre=$EBROOTPCRE --with-boost=$EBROOTBOOST "
 configopts += "--with-gmp=$EBROOTGMP --with-png=$EBROOTLIBPNG "
Diff against BLAST+-2.14.0-gompi-2022b.eb

easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb

diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023b.eb
index a4033efcdd..f3626130d0 100644
--- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.0-gompi-2022b.eb
+++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023b.eb
@@ -13,36 +13,37 @@
 easyblock = 'ConfigureMake'
 
 name = 'BLAST+'
-version = '2.14.0'
+version = '2.14.1'
 
 homepage = 'https://blast.ncbi.nlm.nih.gov/'
 description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm
  for comparing primary biological sequence information, such as the amino-acid
  sequences of different proteins or the nucleotides of DNA sequences."""
 
-toolchain = {'name': 'gompi', 'version': '2022b'}
+toolchain = {'name': 'gompi', 'version': '2023b'}
 toolchainopts = {'usempi': True, 'pic': True}
 
 source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/%(namelower)s/%(version)s/']
 sources = ['ncbi-blast-%(version)s+-src.tar.gz']
-checksums = ['bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500']
+checksums = ['712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e']
 
 builddependencies = [('cpio', '2.15')]
 
 dependencies = [
-    ('zlib', '1.2.12'),
+    ('zlib', '1.2.13'),
     ('bzip2', '1.0.8'),
     ('PCRE', '8.45'),
-    ('Boost', '1.81.0'),
-    ('GMP', '6.2.1'),
-    ('libpng', '1.6.38'),
-    ('libjpeg-turbo', '2.1.4'),
-    ('LMDB', '0.9.29'),
+    ('Boost', '1.83.0'),
+    ('GMP', '6.3.0'),
+    ('libpng', '1.6.40'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('LMDB', '0.9.31'),
 ]
 
 # remove line that prepends system paths to $PATH from configure script
 preconfigopts = r'sed -i "s|^PATH=\(.*\)$|#PATH=\1 |" %(start_dir)s/src/build-system/configure && '
 
+
 configopts = "--with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 "
 configopts += "--with-pcre=$EBROOTPCRE --with-boost=$EBROOTBOOST "
 configopts += "--with-gmp=$EBROOTGMP --with-png=$EBROOTLIBPNG "
Diff against BLAST+-2.13.0-gompi-2022a.eb

easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb

diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023b.eb
index 4e9e9d4d83..f3626130d0 100644
--- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.13.0-gompi-2022a.eb
+++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.14.1-gompi-2023b.eb
@@ -13,36 +13,37 @@
 easyblock = 'ConfigureMake'
 
 name = 'BLAST+'
-version = '2.13.0'
+version = '2.14.1'
 
 homepage = 'https://blast.ncbi.nlm.nih.gov/'
 description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm
  for comparing primary biological sequence information, such as the amino-acid
  sequences of different proteins or the nucleotides of DNA sequences."""
 
-toolchain = {'name': 'gompi', 'version': '2022a'}
+toolchain = {'name': 'gompi', 'version': '2023b'}
 toolchainopts = {'usempi': True, 'pic': True}
 
 source_urls = ['https://ftp.ncbi.nlm.nih.gov/blast/executables/%(namelower)s/%(version)s/']
 sources = ['ncbi-blast-%(version)s+-src.tar.gz']
-checksums = ['89553714d133daf28c477f83d333794b3c62e4148408c072a1b4620e5ec4feb2']
+checksums = ['712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e']
 
-builddependencies = [('cpio', '2.14')]
+builddependencies = [('cpio', '2.15')]
 
 dependencies = [
-    ('zlib', '1.2.12'),
+    ('zlib', '1.2.13'),
     ('bzip2', '1.0.8'),
     ('PCRE', '8.45'),
-    ('Boost', '1.79.0'),
-    ('GMP', '6.2.1'),
-    ('libpng', '1.6.37'),
-    ('libjpeg-turbo', '2.1.3'),
-    ('LMDB', '0.9.29'),
+    ('Boost', '1.83.0'),
+    ('GMP', '6.3.0'),
+    ('libpng', '1.6.40'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('LMDB', '0.9.31'),
 ]
 
 # remove line that prepends system paths to $PATH from configure script
 preconfigopts = r'sed -i "s|^PATH=\(.*\)$|#PATH=\1 |" %(start_dir)s/src/build-system/configure && '
 
+
 configopts = "--with-z=$EBROOTZLIB --with-bz2=$EBROOTBZIP2 "
 configopts += "--with-pcre=$EBROOTPCRE --with-boost=$EBROOTBOOST "
 configopts += "--with-gmp=$EBROOTGMP --with-png=$EBROOTLIBPNG "

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant