{tools}[foss/2021a] cwltool v3.1.20221018083734 w/ Python 3.9.5

easybuild/easyconfigs/c/cwltool/cwltool-3.1.20221018083734-GCCcore-10.3.0.eb

@@ -0,0 +1,117 @@
+##
+# This is a contribution from SIB Swiss Institute of Bioinformatics
+# Homepage:     https://www.sib.swiss/research-infrastructure/competence-centers/vital-it
+#
+# Authors::     Sebastien Moretti <[email protected]>
+#
+##
+
+easyblock = 'PythonBundle'
+
+name = 'cwltool'
+version = '3.1.20221018083734'
+
+homepage = 'https://github.com/common-workflow-language/cwltool'
+description = """Common workflow language (CWL) reference implementation."""
+
+toolchain = {'name': 'GCCcore', 'version': '10.3.0'}
+
+builddependencies = [
+    ('binutils', '2.36.1'),
+    ('CMake',    '3.20.1'),
+    ('make',     '4.3'),
+    ('Check',    '0.15.2'),
+    ('SWIG',     '4.0.2'),
+    ('expat',    '2.2.9'),
+    ('bzip2',    '1.0.8'),
+    ('zlib',     '1.2.11'),
+]
+
+# The Qt5 dependency of Graphviz (required by pydot) may be long to build and
+# requires a lot of disk space and memory!
+dependencies = [
+    ('Python',            '3.9.5'),
+    ('typing-extensions', '3.10.0.0'),
+    ('pydot',             '1.4.2'),
+    ('lxml',              '4.6.3'),
+]
+
+use_pip = True
+
+# Fetch the tar.gz, not the whl files!
+exts_list = [
+    ('argcomplete', '2.0.0', {
+        'checksums': ['6372ad78c89d662035101418ae253668445b391755cfe94ea52f1b9d22425b20'],
+    }),
+    ('humanfriendly', '10.0', {
+        'checksums': ['6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc'],
+    }),
+    ('coloredlogs', '15.0.1', {
+        'checksums': ['7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0'],
+    }),
+    ('ruamel.yaml.clib', '0.2.7', {
+        'modulename': 'ruamel.yaml',
+        'checksums': ['1f08fd5a2bea9c4180db71678e850b995d2a5f4537be0e94557668cf0f5f9497'],
+    }),
+    ('ruamel.yaml', '0.17.14', {
+        'modulename': 'ruamel',
+        'checksums': ['4185fcfa9e037fea9ffd0bb6172354a03ec98c21e462355d72e068c74e493512'],
+    }),
+    ('isodate', '0.6.1', {
+        'checksums': ['48c5881de7e8b0a0d648cb024c8062dc84e7b840ed81e864c7614fd3c127bde9'],
+    }),
+    ('rdflib', '6.2.0', {
+        'checksums': ['62dc3c86d1712db0f55785baf8047f63731fa59b2682be03219cb89262065942'],
+    }),
+    ('mistune', '0.8.4', {
+        'checksums': ['59a3429db53c50b5c6bcc8a07f8848cb00d7dc8bdb431a4ab41920d201d4756e'],
+    }),
+    ('schema-salad', '8.3.20221016151607', {
+        'modulename': 'schema_salad',
+        'checksums': ['c61a517c945cd383445ebecbc085b00766913a3fdd7df9699a0fa4c41728ca1f'],
+    }),
+    ('shellescape', '3.8.1', {
+        'checksums': ['40b310b30479be771bf3ab28bd8d40753778488bd46ea0969ba0b35038c3ec26'],
+    }),
+    ('cwlformat', '2022.2.18', {
+        'modulename': 'cwlformat',
+        'source_tmpl': 'cwlformat-%(version)s-py3-none-any.whl',
+        'checksums': ['d3e2dca192ce10e703ed4eb0bae26539db08d8ddd7c6a6fe9d1406c3f1b53cda'],
+    }),
+    ('cwl-upgrader', '1.2.4', {
+        'modulename': 'cwlupgrader',
+        'checksums': ['b25fc236407343d44cc830ac3f63eed395b8d872fc7e17db92cde583d4a3b2ec'],
+    }),
+    ('cwl-utils', '0.20', {
+        'modulename': 'cwl_utils',
+        'checksums': ['28472aaba50ab4e8380c29f31c27beb63f60a1af1690369ab7bb7e31e71e66d9'],
+    }),
+    ('mypy-extensions', '0.4.3', {
+        'modulename': 'mypy_extensions',
+        'source_tmpl': 'mypy_extensions-%(version)s.tar.gz',
+        'checksums': ['2d82818f5bb3e369420cb3c4060a7970edba416647068eb4c5343488a6c604a8'],
+    }),
+    ('networkx', '2.8.7', {
+        'checksums': ['815383fd52ece0a7024b5fd8408cc13a389ea350cd912178b82eed8b96f82cd3'],
+    }),
+    ('prov', '1.5.1', {
+        'checksums': ['7a2d72b0df43cd9c6e374d815c8ce3cd5ca371d54f98f837853ac9fcc98aee4c'],
+    }),
+    ('bagit', '1.8.1', {
+        'checksums': ['37df1330d2e8640c8dee8ab6d0073ac701f0614d25f5252f9e05263409cee60c'],
+    }),
+    ('cwltool', '3.1.20221018083734', {
+        'checksums': ['06d08f390ed7577ac66c6eef0c98f915363b5e36c04daa1353e3f2d0c5e19f17'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/cwltool'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ["cwltool --version"]
+
+sanity_pip_check = True
+
+moduleclass = 'tools'