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Merge pull request #19088 from WilleBell/20231027113027_new_pr_PICRUS…
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{bio}[foss/2022a] PICRUSt2 v2.5.2 w/ Python 3.10.4
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bedroge authored Nov 1, 2023
2 parents fe4874d + 7e7c7d1 commit cabb439
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49 changes: 49 additions & 0 deletions easybuild/easyconfigs/p/PICRUSt2/PICRUSt2-2.5.2-foss-2022a.eb
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easyblock = 'PythonBundle'

name = 'PICRUSt2'
version = '2.5.2'

homepage = 'https://github.com/picrust/picrust2'
description = """PICRUSt2 (Phylogenetic Investigation of Communities by
Reconstruction of Unobserved States) is a software for predicting
functional abundances based only on marker gene sequences."""

toolchain = {'name': 'foss', 'version': '2022a'}

dependencies = [
('Python', '3.10.4'),
('SciPy-bundle', '2022.05'),
('h5py', '3.7.0'),
('biom-format', '2.1.14'),
]

use_pip = True
sanity_pip_check = True

exts_list = [
('joblib', '1.3.1', {
'checksums': ['1f937906df65329ba98013dc9692fe22a4c5e4a648112de500508b18a21b41e3'],
}),
(name, version, {
'modulename': '%(namelower)s',
'source_tmpl': 'v%(version)s.tar.gz',
'source_urls': ['https://github.com/picrust/%(namelower)s/archive'],
'checksums': ['a8c3832bf759233b52b41c56a0ffef72491e431fee347a7c05695596c76a1a4c'],
}),
]

postinstallcmds = [
"cp -a %(start_dir)s%(name)s/%(namelower)s-%(version)s/%(namelower)s/default_files"
" %(installdir)s/lib/python%(pyshortver)s/site-packages/%(namelower)s/"
]

sanity_check_commands = [
"python -c 'from picrust2.default import default_tables'"
]

sanity_check_paths = {
'files': ['bin/picrust2_pipeline.py'],
'dirs': ['lib/python%(pyshortver)s/site-packages/picrust2/default_files'],
}

moduleclass = 'bio'

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