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adding easyconfigs: Seurat-4.4.0-foss-2022b-R-4.2.2.eb
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verdurin committed Oct 24, 2023
1 parent 3f0b015 commit c1c1ef0
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76 changes: 76 additions & 0 deletions easybuild/easyconfigs/s/Seurat/Seurat-4.4.0-foss-2022b-R-4.2.2.eb
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easyblock = 'Bundle'

name = 'Seurat'
version = '4.4.0'
versionsuffix = '-R-%(rver)s'

homepage = 'https://satijalab.org/seurat'
description = "Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data."

toolchain = {'name': 'foss', 'version': '2022b'}

dependencies = [
('R', '4.2.2'),
('R-bundle-Bioconductor', '3.16', versionsuffix),
]

exts_defaultclass = 'RPackage'
exts_default_options = {
'sources': ['%(name)s_%(version)s.tar.gz'],
'source_urls': [
'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive
'https://cran.r-project.org/src/contrib/', # current version of packages
'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages
],
}

exts_list = [
('Matrix', '1.6-1.1', {
'checksums': ['331eb1f1fe9441d4224d8551072443596001b50e8c15618f59cb938b46ee8cc2'],
}),
('sp', '1.5-1', {
'checksums': ['69b9eab481d389bbb736d2adcf50c180aca248c3ffc4ebda8ffe2accc5f229df'],
}),
('SeuratObject', '4.1.4', {
'checksums': ['74e7649ad9795c962c0b12d039d7bf9b11a8a275a63c3a0fa1205b684e5310ef'],
}),
('sctransform', '0.4.0', {
'checksums': ['9aef10c196a9578e0d7a8e244c55cf28eb0685947d9df9e2d7790c2b99c6b4b3'],
}),
('uwot', '0.1.14', {
'checksums': ['8016e8192b7e72604ca71840cbe43fa1d2caed8a8ad7cbf20e85cd3b384a9fe0'],
}),
('spatstat.utils', '3.0-1', {
'checksums': ['cba1c7806564fd9145ca15edf77233d6ba5609f0989f7812221f5fc1ece0b91a'],
}),
('spatstat.data', '3.0-0', {
'checksums': ['cff9058a88489020a4a05b9576cd452f37fa9b42084873c474d06931f5187057'],
}),
('spatstat.geom', '3.0-3', {
'checksums': ['6e5b56c60e774a0cdcaa5a8ffde071225f233832446a341588bd8a7840913c84'],
}),
('spatstat.random', '3.0-1', {
'checksums': ['938c845c063b8781bf894c0a67537e7b2a7c425a4beba4a95ec9d2c37b43e5b6'],
}),
('spatstat.sparse', '3.0-0', {
'checksums': ['99be0a3c7592760fdf1668dc0811f75ed91c400390d1ecc3d5e643255f501ad2'],
}),
('spatstat.explore', '3.0-5', {
'checksums': ['9f438a12fac3f3e1d0bd550b1393c1e5732be694517b0878db09da557d6dc862'],
}),
('scattermore', '1.2', {
'checksums': ['5534a87b0bdd1375f0fbffc1a5c980ad64e33a108435a67469b8324b580602d1'],
}),
(name, version, {
'checksums': ['0f17df9597642cfc1db4d8718f0b59ebab9fbed328b1f885f42ee85ea0dcb4dd'],
}),
]

sanity_check_paths = {
'files': [],
'dirs': [name],
}

modextrapaths = {'R_LIBS_SITE': ''}

moduleclass = 'bio'

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