strip out '-minsize 1' option from umi_binning.sh in longread_umi 0.3…

….2, since it's not supported by VSEARCH
easybuilders · Oct 5, 2024 · 6913184 · 6913184
1 parent f273295
commit 6913184
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/easybuild/easyconfigs/l/longread_umi/longread_umi-0.3.2-foss-2023a.eb b/easybuild/easyconfigs/l/longread_umi/longread_umi-0.3.2-foss-2023a.eb
@@ -63,6 +63,8 @@ postinstallcmds = [
  # Part of the installation process; longread uses porechop with custom adapters
  'cp %(installdir)s/scripts/adapters.py %(installdir)s/lib/python%(pyshortver)s/site-packages/porechop/',
  local_deps_patch,
+ # -minsize option not supported by 'vsearch -cluster_fast', and probably not needed
+ "sed -i 's/-minsize 1//g' %(installdir)s/scripts/umi_binning.sh",
 ]
 
 sanity_check_paths = {