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use separate pages in software overview (for EasyBuild v4.9.2)
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4 changes: 2 additions & 2 deletions .github/workflows/test.yml
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ignore_words_list: atleast,ninjs,simpy,proovread,namd,precice,crate,ake
# filter out
# docs/js/asciinema-player-2.6.1.js as it is not markdown
# version-specific/supported-software.md as the software descriptions have spelling errors
skip: './docs/js/asciinema-player-2.6.1.js,./docs/version-specific/supported-software.md,./docs/release-notes.md'
# version-specific/supported-software/* as the software descriptions have spelling errors
skip: './docs/js/asciinema-player-2.6.1.js,./docs/version-specific/supported-software/*,./docs/version-specific/supported-software/*/*.md,./docs/release-notes.md'

- name: check internal links
run: python ./.github/workflows/link_check.py
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2 changes: 1 addition & 1 deletion docs/version-specific/index.md
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* [List of available easyblocks](easyblocks.md)
* [List of available toolchain options](toolchain-opts.md)
* [List of known toolchains](toolchains.md)
* [List of supported software](supported-software.md)
* [List of supported software](supported-software/index.md)
* [Overview of EasyBuild configuration options](eb-help.md)
* [Overview of generic easyblocks](generic-easyblocks.md)
* [Templates available for easyconfig files](easyconfig-templates.md)
44,897 changes: 0 additions & 44,897 deletions docs/version-specific/supported-software.md

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17 changes: 17 additions & 0 deletions docs/version-specific/supported-software/0/3d-dna.md
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# 3d-dna

3D de novo assembly (3D DNA) pipeline

*homepage*: <https://github.com/theaidenlab/3d-dna>

version | versionsuffix | toolchain
--------|---------------|----------
``180922`` | ``-Python-2.7.15`` | ``GCCcore/8.2.0``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

19 changes: 19 additions & 0 deletions docs/version-specific/supported-software/0/3to2.md
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# 3to2

lib3to2 is a set of fixers that are intended to backport code written for Python version 3.x into Python version 2.x.

*homepage*: <https://pypi.python.org/pypi/3to2>

version | versionsuffix | toolchain
--------|---------------|----------
``1.1.1`` | ``-Python-2.7.12`` | ``foss/2016b``
``1.1.1`` | ``-Python-2.7.12`` | ``intel/2016b``
``1.1.1`` | ``-Python-2.7.13`` | ``intel/2017a``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

20 changes: 20 additions & 0 deletions docs/version-specific/supported-software/0/4ti2.md
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# 4ti2

A software package for algebraic, geometric and combinatorial problems on linear spaces

*homepage*: <https://4ti2.github.io/>

version | toolchain
--------|----------
``1.6.10`` | ``GCC/13.2.0``
``1.6.9`` | ``GCC/11.3.0``
``1.6.9`` | ``GCC/8.2.0-2.31.1``
``1.6.9`` | ``intel/2018b``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

17 changes: 17 additions & 0 deletions docs/version-specific/supported-software/0/index.md
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# List of supported software (0)

*(quick links: [(all)](../index.md) - *0* - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*



* [3d-dna](3d-dna.md)
* [3to2](3to2.md)
* [4ti2](4ti2.md)


*(quick links: [(all)](../index.md) - *0* - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

26 changes: 26 additions & 0 deletions docs/version-specific/supported-software/a/ABAQUS.md
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# ABAQUS

Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.

*homepage*: <http://www.simulia.com/products/abaqus_fea.html>

version | versionsuffix | toolchain
--------|---------------|----------
``2017`` | ``-hotfix-1721`` | ``system``
``2018`` | ``-hotfix-1806`` | ``system``
``2020`` | | ``system``
``2021`` | ``-hotfix-2132`` | ``system``
``2022`` | ``-hotfix-2214`` | ``system``
``2022`` | ``-hotfix-2223`` | ``system``
``2022`` | | ``system``
``6.12.1`` | ``-linux-x86_64`` | ``system``
``6.13.5`` | ``-linux-x86_64`` | ``system``
``6.14.1`` | ``-linux-x86_64`` | ``system``


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43 changes: 43 additions & 0 deletions docs/version-specific/supported-software/a/ABINIT.md
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# ABINIT

Abinit is a plane wave pseudopotential code for doing condensed phase electronic structure calculations using DFT.

*homepage*: <http://www.abinit.org/>

version | versionsuffix | toolchain
--------|---------------|----------
``7.0.3`` | ``-x86_64_linux_gnu4.5`` | ``system``
``7.0.5`` | ``-x86_64_linux_gnu4.5`` | ``system``
``7.10.5`` | ``-libxc`` | ``intel/2016.02-GCC-4.9``
``7.10.5`` | | ``intel/2016.02-GCC-4.9``
``7.2.1`` | ``-x86_64_linux_gnu4.5`` | ``system``
``8.0.8`` | | ``intel/2016a``
``8.0.8b`` | | ``foss/2016b``
``8.0.8b`` | | ``intel/2016b``
``8.10.2`` | | ``intel/2018b``
``8.10.3`` | | ``intel/2018b``
``8.2.2`` | | ``foss/2016b``
``8.2.2`` | | ``intel/2016b``
``8.4.4`` | | ``intel/2017b``
``8.6.3`` | | ``intel/2018a``
``9.10.3`` | | ``intel/2022a``
``9.2.1`` | | ``foss/2019b``
``9.2.1`` | | ``intel/2019b``
``9.2.1`` | | ``intel/2020a``
``9.4.1`` | | ``foss/2020b``
``9.4.1`` | | ``intel/2020a``
``9.4.1`` | | ``intel/2020b``
``9.4.2`` | | ``foss/2021a``
``9.4.2`` | | ``intel/2021a``
``9.6.2`` | | ``foss/2022a``
``9.6.2`` | | ``intel/2021a``
``9.6.2`` | | ``intel/2021b``
``9.6.2`` | | ``intel/2022a``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

19 changes: 19 additions & 0 deletions docs/version-specific/supported-software/a/ABRA2.md
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# ABRA2

Assembly Based ReAligner

*homepage*: <https://github.com/mozack/abra2>

version | toolchain
--------|----------
``2.22`` | ``iccifort/2019.5.281``
``2.23`` | ``GCC/10.2.0``
``2.23`` | ``GCC/9.3.0``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

19 changes: 19 additions & 0 deletions docs/version-specific/supported-software/a/ABRicate.md
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# ABRicate

Mass screening of contigs for antimicrobial and virulence genes

*homepage*: <https://github.com/tseemann/abricate>

version | versionsuffix | toolchain
--------|---------------|----------
``0.9.9`` | ``-Perl-5.28.1`` | ``gompi/2019a``
``0.9.9`` | | ``gompi/2019b``
``1.0.0`` | | ``gompi/2021a``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

26 changes: 26 additions & 0 deletions docs/version-specific/supported-software/a/ABySS.md
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# ABySS

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

*homepage*: <http://www.bcgsc.ca/platform/bioinfo/software/abyss>

version | toolchain
--------|----------
``1.9.0`` | ``foss/2016a``
``2.0.2`` | ``foss/2016b``
``2.0.2`` | ``foss/2018a``
``2.0.2`` | ``gompi/2019a``
``2.0.2`` | ``intel/2016b``
``2.0.3`` | ``foss/2017b``
``2.0.3`` | ``intel/2017b``
``2.1.5`` | ``foss/2019b``
``2.2.5`` | ``foss/2020b``
``2.3.7`` | ``foss/2023a``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

23 changes: 23 additions & 0 deletions docs/version-specific/supported-software/a/ACTC.md
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# ACTC

ACTC converts independent triangles into triangle strips or fans.

*homepage*: <https://sourceforge.net/projects/actc>

version | toolchain
--------|----------
``1.1`` | ``GCCcore/10.2.0``
``1.1`` | ``GCCcore/11.3.0``
``1.1`` | ``GCCcore/6.4.0``
``1.1`` | ``GCCcore/7.3.0``
``1.1`` | ``GCCcore/8.3.0``
``1.1`` | ``GCCcore/9.3.0``
``1.1`` | ``intel/2016b``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

17 changes: 17 additions & 0 deletions docs/version-specific/supported-software/a/ADDA.md
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# ADDA

ADDA is an open-source parallel implementation of the discrete dipole approximation, capable to simulate light scattering by particles of arbitrary shape and composition in a wide range of particle sizes.

*homepage*: <https://github.com/adda-team/adda/wiki>

version | toolchain
--------|----------
``1.3b4`` | ``foss/2019a``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

21 changes: 21 additions & 0 deletions docs/version-specific/supported-software/a/ADF.md
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# ADF

ADF is a premium-quality quantum chemistry software package based on Density Functional Theory (DFT).

*homepage*: <http://www.scm.com/>

version | versionsuffix | toolchain
--------|---------------|----------
``2009.01a.pc64_linux.intelmpi`` | | ``system``
``2014.02`` | | ``system``
``2014.11.r48287`` | | ``intel/2016a``
``2016.101`` | | ``system``
``2019.303`` | ``-intelmpi`` | ``system``


*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))*

19 changes: 19 additions & 0 deletions docs/version-specific/supported-software/a/ADIOS.md
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# ADIOS

The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation.

*homepage*: <https://www.olcf.ornl.gov/center-projects/adios/>

version | versionsuffix | toolchain
--------|---------------|----------
``1.13.1`` | ``-Python-2.7.15`` | ``foss/2019a``
``1.13.1`` | ``-Python-3.8.2`` | ``foss/2020a``
``20210804`` | ``-Python-3.8.2`` | ``foss/2020a``


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# ADMIXTURE

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.

*homepage*: <https://dalexander.github.io/admixture/>

version | toolchain
--------|----------
``1.3.0`` | ``system``


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# ADOL-C

The package ADOL-C (Automatic Differentiation by OverLoading in C++) facilitates the evaluation of first and higher derivatives of vector functions that are defined by computer programs written in C or C++. The resulting derivative evaluation routines may be called from C/C++, Fortran, or any other language that can be linked with C.

*homepage*: <https://projects.coin-or.org/ADOL-C>

version | toolchain
--------|----------
``2.7.0`` | ``gompi/2019a``
``2.7.2`` | ``gompi/2020a``


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# AEDT

The Ansys Electronics Desktop (AEDT) is a platform that enables true electronics system design. AEDT provides access to the Ansys gold-standard electromagnetics simulation solutions such as Ansys HFSS, Ansys Maxwell, Ansys Q3D Extractor, Ansys SIwave, and Ansys Icepak using electrical CAD (ECAD) and mechanical CAD (MCAD) workflows.

*homepage*: <https://www.ansys.com/products/electronics>

version | toolchain
--------|----------
``2024R1`` | ``system``


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