v1.3.2

Changed nirvana_genes2transcripts to 200910

v1.3.1

Updated multiQC applet to v1.0.6

v1.3.0

• Now using eggd_fastqc instead of DNAnexus native app, this is to enable variable number of fastq input files
• Using updated version of Nirvana app which removes external dependencies (no change to version of Nirvana used within that app)
• Re-analysis functionality added - can now generate variant reports for new panel(s) using existing data (i.e. not using panels listed in the manifest)
• Updated manifest
• Updated MultiQC to handle change to fastqc app and updated multiQC config to match updated QC thresholds

v1.2.4

v1.2.4

Uses updated nirvana_genes2transcripts file

v1.2.3

Changes (compared to v1.2.1):

• Uses updated MultiQC app (v1.0.3)
• Uses updated MultiQC config (v1.0.2)
• Uses updated vcf2xls_nirvana app (v1.1.2)

Note: this release was developed from release v1.2.1. Changes included in v1.2.2 are not present in this release.

v1.2.2

v1.2.2

Updated multi sample workflow to v1.0.1
Now handles multiple NA12878 samples on the same run using new multi happy app
Using new version of multiQC app and config
Using new version of vcf2xls app

v1.2.1

Updated file references
Added shebang

v1.2.0

Now has 4 subcommands:

• single
• multi
• qc
• reports

v1.1.0

Updated to work with first release of Dias workflow
Now runs batch without confirmation prompt

v1.0.0

v1.0.0