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  1. ukhsa-collaboration/LOMA ukhsa-collaboration/LOMA Public

    A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.

    Nextflow 6

  2. PZQ_POPGEN PZQ_POPGEN Public

    Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"

    2 1

  3. SM_VARIATION SM_VARIATION Public

    Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni

  4. schisto_livestock_hybrids schisto_livestock_hybrids Public

    Code repository for the publication: "Genomic evidence of contemporary hybridization between Schistosoma species"

    Python 1

  5. PGL_cgMLST PGL_cgMLST Public

    Code repository for an upcoming publication focused on pneumococcal genome characterization.

    Python 1

  6. useful_scripts useful_scripts Public

    Accessory scripts for file manipulation and other analyses

    Python