Bugfix #2762 PCPCombine derive field info #4842
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| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - develop-ref | |
| - 'feature_**' | |
| - 'main_**' | |
| - 'bugfix_**' | |
| paths-ignore: | |
| - 'docs/**' | |
| - '.github/pull_request_template.md' | |
| - '.github/ISSUE_TEMPLATE/**' | |
| - '.github/labels/**' | |
| - 'build_components/**' | |
| - 'manage_externals/**' | |
| - '**/README.md' | |
| - '**/LICENSE.md' | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| branches: | |
| - develop | |
| - 'main_*' | |
| paths-ignore: | |
| - 'docs/**' | |
| - '.github/pull_request_template.md' | |
| - '.github/ISSUE_TEMPLATE/**' | |
| - '.github/labels/**' | |
| - 'build_components/**' | |
| - 'manage_externals/**' | |
| - '**/README.md' | |
| - '**/LICENSE.md' | |
| workflow_dispatch: | |
| inputs: | |
| force_met_image: | |
| description: 'MET DockerHub repo to force run to use, e.g. met:11.1.0 or met-dev:feature_XYZ_name-PR. Leave this blank to determine repo automatically.' | |
| repository: | |
| description: 'Repository that triggered workflow (used by external repo triggering)' | |
| sha: | |
| description: 'Commit hash that triggered the event (used by external repo triggering)' | |
| ref: | |
| description: 'Branch that triggered event (used by external repo triggering)' | |
| actor: | |
| description: 'User that triggered the event (used by external repo triggering)' | |
| pusher_email: | |
| description: 'Email address of user who triggered push event (used by external repo triggering)' | |
| jobs: | |
| event_info: | |
| name: "Trigger: ${{ github.event_name != 'workflow_dispatch' && github.event_name || github.event.inputs.repository }} ${{ github.event_name != 'workflow_dispatch' && 'event' || github.event.inputs.sha }} ${{ github.event_name != 'workflow_dispatch' && 'local' || github.event.inputs.actor }} " | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Print GitHub values for reference | |
| env: | |
| GITHUB_CONTEXT: ${{ toJson(github) }} | |
| run: echo "$GITHUB_CONTEXT" | |
| - name: Build URL for commit that triggered workflow | |
| if: github.event_name == 'workflow_dispatch' | |
| run: echo https://github.com/${{ github.event.inputs.repository }}/commit/${{ github.event.inputs.sha }} | |
| job_control: | |
| name: Determine which jobs to run | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set job controls | |
| id: job_status | |
| run: .github/jobs/set_job_controls.sh | |
| env: | |
| commit_msg: ${{ github.event.head_commit.message }} | |
| outputs: | |
| matrix: ${{ steps.job_status.outputs.matrix }} | |
| run_some_tests: ${{ steps.job_status.outputs.run_some_tests }} | |
| run_get_image: ${{ steps.job_status.outputs.run_get_image }} | |
| run_get_input_data: ${{ steps.job_status.outputs.run_get_input_data }} | |
| run_diff: ${{ steps.job_status.outputs.run_diff }} | |
| run_unit_tests: ${{ steps.job_status.outputs.run_unit_tests }} | |
| run_save_truth_data: ${{ steps.job_status.outputs.run_save_truth_data }} | |
| external_trigger: ${{ steps.job_status.outputs.external_trigger }} | |
| branch_name: ${{ steps.job_status.outputs.branch_name }} | |
| get_image: | |
| name: Docker Setup - Get METplus Image | |
| runs-on: ubuntu-latest | |
| needs: job_control | |
| if: ${{ needs.job_control.outputs.run_get_image == 'true' && needs.job_control.outputs.run_some_tests == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Get METplus Image | |
| run: .github/jobs/docker_setup.sh | |
| env: | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | |
| EXTERNAL_TRIGGER: ${{ needs.job_control.outputs.external_trigger }} | |
| SET_MET_IMAGE: ${{ github.event.inputs.force_met_image }} | |
| update_data_volumes: | |
| name: Docker Setup - Update Data Volumes | |
| runs-on: ubuntu-latest | |
| needs: job_control | |
| if: ${{ needs.job_control.outputs.run_get_input_data == 'true' && needs.job_control.outputs.run_some_tests == 'true' }} | |
| continue-on-error: true | |
| steps: | |
| - uses: dtcenter/metplus-action-data-update@v3 | |
| with: | |
| docker_name: ${{ secrets.DOCKER_USERNAME }} | |
| docker_pass: ${{ secrets.DOCKER_PASSWORD }} | |
| repo_name: ${{ github.repository }} | |
| data_prefix: sample_data | |
| branch_name: ${{ needs.job_control.outputs.branch_name }} | |
| docker_data_dir: /data/input/METplus_Data | |
| data_repo_dev: metplus-data-dev | |
| data_repo_stable: metplus-data | |
| use_feature_data: true | |
| tag_max_pages: 15 | |
| unit_tests: | |
| name: Unit Tests | |
| runs-on: ubuntu-latest | |
| needs: [job_control] | |
| if: ${{ needs.job_control.outputs.run_unit_tests == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| - name: Install Python Test Dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install -r internal/tests/pytests/requirements.txt | |
| - name: Install ImageMagick convert | |
| run: sudo apt install imagemagick | |
| - name: Run Pytests | |
| run: coverage run -m pytest internal/tests/pytests | |
| env: | |
| METPLUS_TEST_OUTPUT_BASE: ${{ runner.workspace }}/pytest_output | |
| - name: Generate coverage report | |
| run: | | |
| coverage report -m --fail-under=90 || echo "::error file=coverage,line=1,col=1::Code coverage is below 90%" | |
| if: always() | |
| continue-on-error: true | |
| - name: Run Coveralls | |
| uses: AndreMiras/coveralls-python-action@8799c9f4443ac4201d2e2f2c725d577174683b99 | |
| if: always() | |
| continue-on-error: true | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| use_case_tests: | |
| name: Use Case Tests | |
| runs-on: ubuntu-latest | |
| needs: [get_image, update_data_volumes, job_control, unit_tests] | |
| if: ${{ needs.job_control.outputs.run_some_tests == 'true' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{fromJson(needs.job_control.outputs.matrix)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free disk space | |
| run: .github/jobs/free_disk_space.sh | |
| - name: Create directories for database | |
| run: .github/jobs/create_dirs_for_database.sh | |
| - name: Create directory for artifacts | |
| run: mkdir -p artifact | |
| - name: Get artifact name | |
| id: get-artifact-name | |
| run: | | |
| artifact_name=`.github/jobs/get_artifact_name.sh ${{ matrix.categories }}` | |
| echo "artifact_name=${artifact_name}" >> $GITHUB_OUTPUT | |
| # run use case tests | |
| - name: Run Use Cases | |
| uses: ./.github/actions/run_tests | |
| id: run_tests | |
| with: | |
| categories: ${{ matrix.categories }} | |
| # copy logs with errors to error_logs directory to save as artifact | |
| - name: Save error logs | |
| id: save-errors | |
| if: ${{ always() && steps.run_tests.conclusion == 'failure' }} | |
| run: .github/jobs/save_error_logs.sh | |
| # run difference testing | |
| - name: Run difference tests | |
| id: run-diff | |
| if: ${{ needs.job_control.outputs.run_diff == 'true' && steps.run_tests.conclusion == 'success' }} | |
| run: .github/jobs/run_difference_tests.sh ${{ matrix.categories }} ${{ steps.get-artifact-name.outputs.artifact_name }} | |
| # copy output data to save as artifact | |
| - name: Save output data | |
| id: save-output | |
| if: ${{ always() && steps.run_tests.conclusion != 'skipped' }} | |
| run: .github/jobs/copy_output_to_artifact.sh ${{ steps.get-artifact-name.outputs.artifact_name }} | |
| - name: Upload output data artifact | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() && steps.run_tests.conclusion != 'skipped' }} | |
| with: | |
| name: ${{ steps.get-artifact-name.outputs.artifact_name }} | |
| path: artifact/${{ steps.get-artifact-name.outputs.artifact_name }} | |
| - name: Upload error logs artifact | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() && steps.save-errors.outputs.upload_error_logs }} | |
| with: | |
| name: error_logs-${{ steps.get-artifact-name.outputs.artifact_name }} | |
| path: artifact/error_logs | |
| if-no-files-found: ignore | |
| - name: Upload difference data artifact | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() && steps.run-diff.outputs.upload_diff == 'true' }} | |
| with: | |
| name: diff-${{ steps.get-artifact-name.outputs.artifact_name }} | |
| path: artifact/diff-${{ steps.get-artifact-name.outputs.artifact_name }} | |
| if-no-files-found: ignore | |
| merge_error_logs: | |
| name: Merge Error Logs | |
| runs-on: ubuntu-latest | |
| needs: use_case_tests | |
| if: ${{ always() && needs.use_case_tests.result == 'failure' }} | |
| steps: | |
| - name: Check for error logs | |
| id: check-for-error-logs | |
| run: | | |
| json_data=$(curl -s -H "Authorization: Bearer ${{ github.token }}" \ | |
| "https://api.github.com/repos/${{ github.repository }}/actions/runs/${{ github.run_id }}/jobs") | |
| error_log_jobs=($(echo "$json_data" | jq -r '.jobs[] | select(.name | startswith("Use Case Tests")) | .steps[] | select(.name | startswith("Save error logs")) | select(.conclusion | startswith("success"))')) | |
| # save output variable to merge error logs if any error logs were created | |
| if [ ! -z "${error_log_jobs}" ]; then | |
| echo "has_error_logs=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "has_error_logs=false" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Merge Artifacts | |
| if: ${{ always() && steps.check-for-error-logs.outputs.has_error_logs == 'true' }} | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: error_logs | |
| pattern: error_logs-* | |
| delete-merged: true | |
| create_output_data_volumes: | |
| name: Create Output Docker Data Volumes | |
| runs-on: ubuntu-latest | |
| needs: [use_case_tests] | |
| if: ${{ needs.job_control.outputs.run_save_truth_data == 'true' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/download-artifact@v4 | |
| - run: .github/jobs/create_output_data_volumes.sh | |
| env: | |
| DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} |