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Add support for using other docking methods #35

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merged 9 commits into from
Oct 26, 2023
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drewnutt
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Description

This adds instructions and scripts to allow use of docking methods other than GNINA.

Featurization now can look at any molecular property saved to a SDF file to save as a score, provided as newscore during the featurization step.

Adds:

  • USING-NEW-DOCKING-METHODS.md which enumerates the procedure for using Open-ComBind with a new scoring function
  • open_combind/stats_data/features_to_stats.py to calculate the similarity statistics for a set of docked poses (with ground truths)
  • open_combind/stats_data/docked_to_alpha.py to calculate the value of ``alpha'' for a set of docked poses (with ground truths)

Todos

  • Open-ComBind supports new docking tool

Status

  • Ready to go

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codecov bot commented Oct 26, 2023

Codecov Report

Merging #35 (4f01bcc) into main (7b87b62) will increase coverage by 0.86%.
The diff coverage is 9.09%.

Additional details and impacted files

@drewnutt drewnutt merged commit e40b0d3 into main Oct 26, 2023
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@drewnutt drewnutt deleted the other-dock-tools branch October 26, 2023 20:08
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