fix percentlength not updating correctly

dorbarker · Sep 24, 2019 · e7d9a16 · e7d9a16
1 parent 90fbef2
commit e7d9a16
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/fsac/__init__.py b/fsac/__init__.py
@@ -1,3 +1,3 @@
-__version__ = '1.0.3'
+__version__ = '1.0.4'
 __author__ = 'Dillon Barker'
 __email__ = '[email protected]'
diff --git a/fsac/update.py b/fsac/update.py
@@ -141,7 +141,10 @@ def update_genome(genome_data: Dict[str, GeneData],
         gene['Mismatches'] = 0
         gene['Gaps'] = 0
         gene['QueryName'] = name
+        # TODO fix this quirk where 1 is 100% in PercentLength
+        #      and 100 is 100% in PercentIdentity
         gene['PercentIdentity'] = 100
+        gene['PercentLength'] = 1
         gene['MarkerMatch'] = name
         gene['CorrectMarkerMatch'] = True