search only ungapped

dorbarker · May 25, 2020 · b62e34e · b62e34e
1 parent 56538ff
commit b62e34e
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/fsac/__init__.py b/fsac/__init__.py
@@ -1,3 +1,3 @@
-__version__ = '1.1.0'
+__version__ = '1.2.0'
 __author__ = 'Dillon Barker'
 __email__ = '[email protected]'
diff --git a/fsac/allele_call.py b/fsac/allele_call.py
@@ -23,6 +23,7 @@ def blast(query_path: Path, genome_path: Path) -> pd.DataFrame:
                   slen bitscore gaps sseq qseq mismatch'
 
     blast_cmd = ['blastn',
+                 '-ungapped',
                  '-query', str(query_path),
                  '-subject', str(genome_path),
                  '-outfmt', out_format]