Code

TAO interface#143

Code

Merged

dham merged 72 commits intodolfin-adjoint:masterdolfin-adjoint/pyadjoint:masterfrom jrmaddison:jrmaddison/taojrmaddison/pyadjoint:jrmaddison/taoCopy head branch name to clipboardOct 3, 2024

+810-2

Commits

Commits on Sep 20, 2024

• Basic TAO interface, add to Firedrake tests

  jrmaddison

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  63c37ee

• OverloadedType / PETSc Vec conversion interface (ported from tlm_adjoint)

  jrmaddison

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  3373a25

• Update comment

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  1ccb0d3

• Remove PETScVecInterface.dtype

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  3230abf

• Port TAO interface from tlm_adjoint

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  32b87f3

• TAO interface: Bounds

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  0a319c7

• Parallel is incorrect -- raise an exception

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  4b44451

• Parallel workaround

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  64eb9ff

• Parallel fix

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  b69e269

• Parallel fix

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  36cfd6a

• Parallel fix

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  a337a51

• Correct initial guess

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  f030221

• Add missing first order adjoint run when evaluating Hessian actions

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  3acde76

• Convert assertion failure to a ValueError exception

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  8464ff5

• Documentation, tidying

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  b3cc040

• Add destroy calls

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  2772a75

• Bugfix

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  a55c91d

• Define the LMVM initial Hessian inverse, set to be the same as used for the gradient norm

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  6812201

• flake8

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  08c3d5c

• Remove use of _ad_convert_type when defining bounds

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  a80a0e7

• TaoSetUp should be called last

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  611af4c

• API update

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  79b0855

• Documentation

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  d6a5cd5

• Add warning re the use of a global vector

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  4e92511

• Restore delete part of test_simple_inversion

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  abb3c07

• flake8

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  1448494

• Correct documentation

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  d4fa983

• test vec concatenate

  

  Ig-dolci

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• wip

  

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  a7fb96b

• ok

  

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  6458edc

• Update pyadjoint/adjfloat.py

  Show description for 704dbaf
  

  Ig-dolci

  and

  jrmaddison

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  704dbaf

• Update pyadjoint/optimization/tao_solver.py

  Show description for bc1e773
  

  Ig-dolci

  and

  jrmaddison

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  bc1e773

• wip

  

  Ig-dolci

  authored and

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  d006c38

• adjfloat update

  

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  f45ac87

• wip

  

  Ig-dolci

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  95c42d5

• prepared bounds; ad_assign

  

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  485e836

• linting

  

  Ig-dolci

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  e087687

• _ad_to_petsc/_ad_from_petsc

  

  Ig-dolci

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  775d1e3

• Update pyadjoint/adjfloat.py

  

  Ig-dolci

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  e490d58

• Update pyadjoint/adjfloat.py

  

  Ig-dolci

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  jrmaddison

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  8760619

• Apply suggestions from code review

  

  Ig-dolci

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  92bbdb7

• Tidying and fixes

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  c3c38d5

• AdjFloat._ad_to_petsc and AdjFloat._ad_from_petsc Exception bugfix and message update

  jrmaddison

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  adc7051

• Update pyadjoint/optimization/tao_solver.py

  Show description for 2cb79bd
  

  jrmaddison

  and

  Ig-dolci

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  2cb79bd

• Update pyadjoint/optimization/tao_solver.py

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  jrmaddison

  and

  Ig-dolci

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  25a12e3

• Documentation

  jrmaddison

  committed
  5c5fb1b

• Apply scalar bounds using PETScVecInterface

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  86577c6

• flake8

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  59cd350

• Remove format specifiers

  jrmaddison

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  6f3a5a5

• Tidying

  jrmaddison

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  39a2178

• Remove OverloadedType._ad_assign

  jrmaddison

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  5995e89

• Check convergence reason

  jrmaddison

  committed
  0d9133b

• Update pyadjoint/overloaded_type.py

  Show description for dd0e192
  

  jrmaddison

  and

  Ig-dolci

  committed
  dd0e192

• Update pyadjoint/overloaded_type.py

  Show description for 0f84623
  

  jrmaddison

  and

  Ig-dolci

  committed
  0f84623

• Update pyadjoint/adjfloat.py

  Show description for 25dab2d
  

  jrmaddison

  and

  Ig-dolci

  committed
  25dab2d

• Update pyadjoint/optimization/tao_solver.py

  Show description for e9a7090
  

  jrmaddison

  and

  Ig-dolci

  committed
  e9a7090

• Add length check before zip

  jrmaddison

  committed
  3142d98

• Clarify that x_sub as returned by getSubVector is passed to restoreSubVector

  jrmaddison

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  3caa063

• Use OptionsManager class from Firedrake, with very minor edits to remove Firedrake specifics

  jrmaddison

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  17e0883

• Document add_destroy_finalizer

  jrmaddison

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  0577926

• Remove Vec.destroy calls

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  56b23d5

• Rename M, X, Y, new_M, new_M_dual

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  233197c

• Document PETSc Python contexts

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  1931549

• Add comment for B_0_matrix

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  8b6021a

• taoobjective -> tao_objective

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  79d6a99

• More descriptive error message on convergence failure

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  19d7695

• Minor fixes

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  733b50a

• Check for PETSc in OptionsManager

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  590cb2d

• Fix comment

  jrmaddison

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  1357952

• PETSc/TAO API fix

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  08674cf

• Remove attach_destroy_finalizer

  jrmaddison

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  cd51a38

Commits on Sep 24, 2024

• flake8

  jrmaddison

  committed
  d30c57e