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Update README.md
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nalcala authored Jul 15, 2020
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Expand Up @@ -48,13 +48,12 @@ Flags are special parameters without value.
------------- | -------------
--help | Display help

## Download test data set ##

`git clone https://github.com/iarcbioinfo/data_test`

## Usage ##

`nextflow run FastQC.nf --input_folder path/to/fasta/ --output_folder /path/to/output`
`nextflow run IARCbioinfo/fastqc-nf -r v1.1 -profile singularity --input_folder input --output_folder results`

To run the pipeline without singularity just remove "-profile singularity"

## Output ##

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