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Faster parallel processing pipeline#5

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graeme-winter wants to merge 66 commits intomasterdials/dials_scratch:masterfrom fp3dials/dials_scratch:fp3Copy head branch name to clipboard

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Commits

Commits on Jun 25, 2020

• First cut at a start of a fast_dp with DIALS script

  graeme-winter

  committed
  bd6bc14

• Forgot critical parameter

  graeme-winter

  committed
  5256407

Commits on Jun 26, 2020

• Reassign oscillation range

  Show description for 486cae1
  graeme-winter

  committed
  486cae1

• Commentary

  graeme-winter

  committed
  327e0eb

• Incorporate symmetry, resolution estimation and scaling

  graeme-winter

  committed
  3ea2ebe

Commits on Jun 29, 2020

• Rename to fp3 -

  Show description for cfdd721
  graeme-winter

  committed
  cfdd721

• First cut at tool docs

  graeme-winter

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  700711d

• Rewrite

  graeme-winter

  committed
  710b9cc

Commits on Jun 30, 2020

• Derpee -> fp3

  graeme-winter

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  cff1a0c

• Logic: if image[0] != 1

  graeme-winter

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  3d38dc1

• Start factoring out

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  graeme-winter

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  ce6c550

• Images for indexing

  graeme-winter

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  b10ed7a

• Use index_blocks

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  graeme-winter

  committed
  c79390f

• fp3 -> FP3 because class

  graeme-winter

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  cafa707

• format_phil_include: workaround

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  graeme-winter

  committed
  ba96cde

• Allow passing PHIL overrides

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  graeme-winter

  committed
  c21a0b0

• Define work, duh

  graeme-winter

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  124b2a8

• New implementation of combine

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  graeme-winter

  committed
  10bc773

• Use local implementation of combine

  graeme-winter

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  6714c3c

Commits on Jul 6, 2020

• Fix off-by-one; use scan slicing

  graeme-winter

  committed
  e732087

Commits on Sep 4, 2020

• += boost_adaptbx.

  graeme-winter

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  51b5081

• dials.resolutionizer -> dials.estimate_resolution

  graeme-winter

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  f6f299a

• Parallelism

  Show description for 897d978
  graeme-winter

  committed
  897d978

Commits on Sep 7, 2020

• WIP: create script to perform the processing for drmaa

  graeme-winter

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  0775262

• unlink

  graeme-winter

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  92ff391

• Run shell scripts - useful step along the way to executing on cluster

  graeme-winter

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  6a2bf25

• Look for the environment script

  graeme-winter

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  e4c835f

Commits on Sep 24, 2020

• Implement integrate task execution via drmaa array

  isikhar

  committed
  5e648f2

Commits on Sep 28, 2020

• A regular copy is enough, and much quicker

  graeme-winter

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  74c57e2

• Added elementary logging

  graeme-winter

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  39dca4a

• Show final crystal

  graeme-winter

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  7507c0f

• New file not append mode

  graeme-winter

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  3240040

• Print merging stats

  graeme-winter

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  a55d74d

• typos

  graeme-winter

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  ec60ca1

Commits on Sep 29, 2020

• Processing times

  graeme-winter

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  4377b9c

• Correctly get scaling output

  graeme-winter

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  bfbd3a2

• TODO

  graeme-winter

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  4b41a5d

• Initial documentation

  graeme-winter

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  048debd

• += authors

  graeme-winter

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  c7f9ceb

• Fix indentation

  graeme-winter

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  282d992

• Fix indentation

  graeme-winter

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  5132610

• Fix indentation

  graeme-winter

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  2ce59f6

• italic

  graeme-winter

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  c2bad9b

• If debug; print logs

  graeme-winter

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  930d6ac

Commits on Oct 2, 2020

• Typo

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  graeme-winter

  and

  dagewa

  authored
  c2a32c2

• Typo

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  graeme-winter

  and

  dagewa

  authored
  5d67b4c

• Typo

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  graeme-winter

  and

  dagewa

  authored
  1c6bb8a

• Check file present

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  graeme-winter

  and

  dagewa

  authored
  e469398

• Disambiguate rng

  graeme-winter

  committed
  57ca4ff

• Prime factor code for sharing out cores

  graeme-winter

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  a151b3e

• If nproc and workers == 1 guess sensible division

  graeme-winter

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  b219fc0

Commits on Oct 3, 2020

• Cope with data sets > 5000°

  graeme-winter

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  43ae020

• Add to repo

  graeme-winter

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  299896c

Commits on Oct 5, 2020

• Revert "Add to repo"

  Show description for 8368437
  graeme-winter

  committed
  8368437

Commits on Oct 6, 2020

• Name it: dials.fp3

  graeme-winter

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  4a75fba

• Procrunner API change

  graeme-winter

  committed
  ef4b08d

• More than one experiment

  graeme-winter

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  3fa3fc2

• Multi-sweeps...

  Show description for e0165af
  graeme-winter

  committed
  e0165af

Commits on Oct 31, 2020

• Object files -> ignore

  graeme-winter

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  23d3231

• Revert "Object files -> ignore"

  Show description for cf866c7
  graeme-winter

  committed
  cf866c7

Commits on Nov 2, 2020

• WIP: combine partials

  graeme-winter

  committed
  365d39e

Commits on Nov 3, 2020

• WIP continued: now more sensible

  graeme-winter

  committed
  229ce6b

• Remove old implementation

  graeme-winter

  committed
  e013fad

Commits on Nov 4, 2020

• Remove reflections with -ve variance

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  graeme-winter

  and

  jbeilstenedmands

  authored
  e97dccb

Commits on Jan 26, 2022

• Merge branch 'master' into fp3

  graeme-winter

  committed
  432f51b

• API change

  graeme-winter

  committed
  d2bda55